Mir-7-P4

MirGeneDB ID

Rno-Mir-7-P4

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-7b

Paralogues

Rno-Mir-7-P1 Rno-Mir-7-P2

Orthologues

Aae-Mir-7 Aca-Mir-7-P4 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P4 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P4 Cfa-Mir-7-P4 Cin-Mir-7 Cja-Mir-7-P4 Cli-Mir-7-P4 Cmi-Mir-7-P4 Cpi-Mir-7-P4 Cpo-Mir-7-P4 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P4 Dre-Mir-7-P4b Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Eca-Mir-7-P4 Esc-Mir-7 Ete-Mir-7-P4 Gga-Mir-7-P4 Gja-Mir-7-P4 Gmo-Mir-7-P4a Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Hsa-Mir-7-P4 Isc-Mir-7 Laf-Mir-7-P4 Lan-Mir-7 Lch-Mir-7-P4 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P4 Loc-Mir-7-P4-as Lpo-Mir-7 Mal-Mir-7-P4a Mdo-Mir-7-P4 Mgi-Mir-7 Mml-Mir-7-P4 Mmr-Mir-7-P4 Mmu-Mir-7-P4 Mom-Mir-7 Mun-Mir-7-P4 Neu-Mir-7-P4 Npo-Mir-7 Obi-Mir-7 Ocu-Mir-7-P4 Ofu-Mir-7 Ovu-Mir-7 Pab-Mir-7-P4 Pau-Mir-7 Pbv-Mir-7-P4 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o4 Pmi-Mir-7 Pve-Mir-7 Rph-Mir-7 Sha-Mir-7-P4 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P4 Spu-Mir-7 Sro-Mir-7 Sto-Mir-7-P4 Tca-Mir-7 Tgu-Mir-7-P4 War-Mir-7 Xbo-Mir-7

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr9: 10812454-10812513 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAAGGCCAGAACACAUGAGCCAAUGCUAUGUGGAAGACUUGUGAUUUUGUUGUUCUGAUAUGAUAUGACAACAAGUCACAGCCAGCCUCAUAGAGUGGACUCCCAUCACCUUUCUACUGA

Get precursor sequence

Structure

        10           20        30        40        50        60
UAAGGCCAGAACACAUG--  -|  AUG     U  AAGAC         U      CUGAU 
                   AG CCA   CUAUG GG     UUGUGAUUU GUUGUU     A
                   UC GGU   GAUAC CC     GACACUGAA CAACAG     U
AGUCAUCUUUCCACUACCC  A^  GA-     U  GACC-         -      UAUAG 
.       110       100         90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-7-P4_5p

mirBase accession

MIMAT0000780

Sequence

0- UGGAAGACUUGUGAUUUUGUUGUU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000780
TargetScanVert: rno-miR-7b
miRDB: MIMAT0000780

Star sequence

Rno-Mir-7-P4_3p*

mirBase accession

None

Sequence

38- CAACAAGUCACAGCCAGCCUCA -60

Get sequence