MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-7-P4

Family name MIR-7 (all species)
Seed GGAAGAC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-7a-3
Paralogues Ami-Mir-7-P1  Ami-Mir-7-P2  Ami-Mir-7-P3 
Orthologues Aae-Mir-7  Aca-Mir-7-P4  Aga-Mir-7  Agr-Mir-7  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P4  Cfa-Mir-7-P4  Cin-Mir-7  Cja-Mir-7-P4  Cli-Mir-7-P4  Cmi-Mir-7-P4  Cpi-Mir-7-P4  Cpo-Mir-7-P4  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P4  Dre-Mir-7-P4b  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Eca-Mir-7-P4  Esc-Mir-7  Ete-Mir-7-P4  Gga-Mir-7-P4  Gja-Mir-7-P4  Gmo-Mir-7-P4a  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Hsa-Mir-7-P4  Isc-Mir-7  Laf-Mir-7-P4  Lan-Mir-7  Lch-Mir-7-P4  Lgi-Mir-7  Llo-Mir-7  Loc-Mir-7-P4  Loc-Mir-7-P4-as  Lpo-Mir-7  Mal-Mir-7-P4a  Mdo-Mir-7-P4  Mgi-Mir-7  Mml-Mir-7-P4  Mmr-Mir-7-P4  Mmu-Mir-7-P4  Mom-Mir-7  Mun-Mir-7-P4  Neu-Mir-7-P4  Npo-Mir-7  Obi-Mir-7  Ocu-Mir-7-P4  Ofu-Mir-7  Ovu-Mir-7  Pab-Mir-7-P4  Pau-Mir-7  Pbv-Mir-7-P4  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pma-Mir-7-o4  Pmi-Mir-7  Pve-Mir-7  Rno-Mir-7-P4  Rph-Mir-7  Sha-Mir-7-P4  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spt-Mir-7-P4  Spu-Mir-7  Sro-Mir-7  Sto-Mir-7-P4  Tca-Mir-7  Tgu-Mir-7-P4  War-Mir-7  Xbo-Mir-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017708796.1: 115157-115219 [+] UCSC
Precursor
(pre-Mir +30nt flank)
ACGCGCUGCCGCUCGUCGUCUGGCUCUGCGUGGAAGACUAGUGAUUUUGUUGUUCUGACUUAUAAAGGUGACAACAAAUCAUAGCCUGCCAUACAGCACAGACUCGCACCACGCGCCAAUAGG
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Structure
        10           20        30        40        50        60  
ACGCGCUGCCGCUCGUC---|    GCU   CG   A  A   G      U      CUGACUU 
                    GUCUG   CUG  UGG AG CUA UGAUUU GUUGUU       \
                    CAGAC   GAC  ACC UC GAU ACUAAA CAACAG       A
GGAUAACCGCGCACCACGCU^    AC-   AU   G  C   -      -      UGGAAAU 
 120       110       100         90         80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-7-P4_5p
mirBase accessionMIMAT0038023
Sequence 
0- UGGAAGACUAGUGAUUUUGUUGUU -24
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Star sequence

Ami-Mir-7-P4_3p* (predicted)
mirBase accessionNone
Sequence 
41- CAACAAAUCAUAGCCUGCCAUA -63
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