MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-7-P1

Family name MIR-7 (all species)
Seed GGAAGAC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-7a-2
Paralogues Ami-Mir-7-P2  Ami-Mir-7-P3  Ami-Mir-7-P4 
Orthologues Aae-Mir-7  Aca-Mir-7-P1  Aga-Mir-7  Agr-Mir-7  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P1  Cfa-Mir-7-P1  Cin-Mir-7  Cja-Mir-7-P1  Cli-Mir-7-P1  Cmi-Mir-7-P1  Cpi-Mir-7-P1  Cpo-Mir-7-P1  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P1  Dre-Mir-7-P1a  Dre-Mir-7-P1b  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Eca-Mir-7-P1  Esc-Mir-7  Ete-Mir-7-P1  Gga-Mir-7-P1  Gja-Mir-7-P1  Gmo-Mir-7-P1a  Gmo-Mir-7-P1b  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Hsa-Mir-7-P1  Isc-Mir-7  Laf-Mir-7-P1  Lan-Mir-7  Lch-Mir-7-P1  Lgi-Mir-7  Llo-Mir-7  Loc-Mir-7-P1  Lpo-Mir-7  Mal-Mir-7-P1a  Mdo-Mir-7-P1  Mgi-Mir-7  Mml-Mir-7-P1  Mmr-Mir-7-P1  Mmu-Mir-7-P1  Mom-Mir-7  Mun-Mir-7-P1e  Mun-Mir-7-P1f  Neu-Mir-7-P1  Npo-Mir-7  Oan-Mir-7-P1  Obi-Mir-7  Ocu-Mir-7-P1  Ofu-Mir-7  Ovu-Mir-7  Pab-Mir-7-P1  Pau-Mir-7  Pbv-Mir-7-P1  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pma-Mir-7-o1  Pmi-Mir-7  Pve-Mir-7  Rno-Mir-7-P1  Rph-Mir-7  Sha-Mir-7-P1  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spt-Mir-7-P1  Spu-Mir-7  Sro-Mir-7  Sto-Mir-7-P1  Tca-Mir-7  Tgu-Mir-7-P1  War-Mir-7  Xbo-Mir-7  Xla-Mir-7-P1c  Xla-Mir-7-P1d  Xtr-Mir-7-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713709.1: 11914595-11914658 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-7-P1)		 Mir-7-P1 NW_017713709.1: 11914595-11914658 [+] UCSC
Mir-1720 NW_017713709.1: 11914848-11914910 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CUCUACUGAGCUCUUCUGCCUGACCCUGUAUGGAAGACUAGUGAUUUUGUUGUUCUAUGGCUCAUCUCACGACAACAAGUCACAGUCUGCCUUAUGGUGCAUGGCCUCGCUCACCCACAGCUCG
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Structure
        10          20         30        40        50        60  
CUCUACUGAGCUCUUCU--   -| AC  U   U  A     A       U     UCUAUGGC 
                   GCC UG  CC GUA GG AGACU GUGAUUU GUUGU        U
                   CGG AC  GG UAU CC UCUGA CACUGAA CAACA        C
GCUCGACACCCACUCGCUC   U^ GU  -   U  G     -       -     GCACUCUA 
  120       110       100         90         80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-7-P1_5p
mirBase accessionMIMAT0038023
Sequence 
0- UGGAAGACUAGUGAUUUUGUUGU -23
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Star sequence

Ami-Mir-7-P1_3p*
mirBase accessionMIMAT0038025
Sequence 
42- CAACAAGUCACAGUCUGCCUUA -64
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