MirGeneDB ID | Spt-Mir-7-P1 |
---|---|
Family name | MIR-7 (all species) |
Seed | GGAAGAC |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-7-P2 Spt-Mir-7-P3 Spt-Mir-7-P4 |
Orthologues | Aae-Mir-7 Aca-Mir-7-P1 Ami-Mir-7-P1 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P1 Cfa-Mir-7-P1 Cgi-Mir-7 Cin-Mir-7 Cli-Mir-7-P1 Cmi-Mir-7-P1 Cpi-Mir-7-P1 Cpo-Mir-7-P1 Cte-Mir-7 Dan-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P1 Dre-Mir-7-P1a Dre-Mir-7-P1b Dsi-Mir-7 Dya-Mir-7 Esc-Mir-7 Ete-Mir-7-P1 Gga-Mir-7-P1 Gja-Mir-7-P1 Gmo-Mir-7-P1a Gmo-Mir-7-P1b Hme-Mir-7 Hsa-Mir-7-P1 Isc-Mir-7 Lan-Mir-7 Lch-Mir-7-P1 Lgi-Mir-7 Loc-Mir-7-P1 Lpo-Mir-7 Mal-Mir-7-P1a Mdo-Mir-7-P1 Mml-Mir-7-P1 Mmu-Mir-7-P1 Mun-Mir-7-P1e Mun-Mir-7-P1f Npo-Mir-7 Oan-Mir-7-P1 Obi-Mir-7 Ocu-Mir-7-P1 Ovu-Mir-7 Pbv-Mir-7-P1 Pfl-Mir-7 Pma-Mir-7-o1 Pmi-Mir-7 Rno-Mir-7-P1 Sha-Mir-7-P1 Sko-Mir-7 Spu-Mir-7 Sto-Mir-7-P1 Tca-Mir-7 Tgu-Mir-7-P1 Xbo-Mir-7 Xla-Mir-7-P1c Xla-Mir-7-P1d Xtr-Mir-7-P1 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01014402.1: 9130206-9130269 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GCUUCACAUACACACCUGCCUGGCCCCAUGUGGAAGACUAGUGAUUUUGUUGUUCUAUAGCUCAUCUCAUGACAACAAGUCACAGUCUACCUUACGGUGUCCGGCCUCUUCAUCGGUGCUGCCGGet precursor sequence |
Structure | 10 20 30 40 50 60 GCUUCACAUACACACCU--| U C A U A A U CUAUAGC GCC GGC CC UG GG AGACU GUGAUUU GUUGUU U CGG CUG GG AU CC UCUGA CACUGAA CAACAG C GCCGUCGUGGCUACUUCUC^ C U C U A - - UACUCUA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Mature sequence | Spt-Mir-7-P1_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGGAAGACUAGUGAUUUUGUUGUU -24
Get sequence
|
Star sequence | Spt-Mir-7-P1_3p* (predicted) |
mirBase accession | None |
Sequence |
42- CAACAAGUCACAGUCUACCUUA -64
Get sequence
|