Mir-7-P1a

MirGeneDB ID

Dre-Mir-7-P1a

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-7a-1

Paralogues

Dre-Mir-7-P1b Dre-Mir-7-P2b Dre-Mir-7-P3 Dre-Mir-7-P4b

Orthologues

Aae-Mir-7 Aca-Mir-7-P1 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P1 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P1 Cfa-Mir-7-P1 Cin-Mir-7 Cja-Mir-7-P1 Cli-Mir-7-P1 Cmi-Mir-7-P1 Cpi-Mir-7-P1 Cpo-Mir-7-P1 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P1 Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Eca-Mir-7-P1 Esc-Mir-7 Ete-Mir-7-P1 Gga-Mir-7-P1 Gja-Mir-7-P1 Gmo-Mir-7-P1a Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Hsa-Mir-7-P1 Isc-Mir-7 Laf-Mir-7-P1 Lan-Mir-7 Lch-Mir-7-P1 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P1 Lpo-Mir-7 Mal-Mir-7-P1a Mdo-Mir-7-P1 Mgi-Mir-7 Mml-Mir-7-P1 Mmr-Mir-7-P1 Mmu-Mir-7-P1 Mom-Mir-7 Neu-Mir-7-P1 Npo-Mir-7 Oan-Mir-7-P1 Obi-Mir-7 Ocu-Mir-7-P1 Ofu-Mir-7 Ovu-Mir-7 Pab-Mir-7-P1 Pau-Mir-7 Pbv-Mir-7-P1 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o1 Pmi-Mir-7 Pve-Mir-7 Rno-Mir-7-P1 Rph-Mir-7 Sha-Mir-7-P1 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P1 Spu-Mir-7 Sro-Mir-7 Sto-Mir-7-P1 Tca-Mir-7 Tgu-Mir-7-P1 War-Mir-7 Xbo-Mir-7 Xtr-Mir-7-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr25: 12472469-12472532 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCAGACACCAGCACUGACCCGAUUCGCUGUGGAAGACUAGUGAUUUUGUUGUUGUUUCUUCUGCUUUCUGACAACAAGUCACAGUCUACCUCAGCGAGCGGGCCCUUUGGCUAAUGGUGUAGA

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Structure

        10           20        30        40        50        60  
UCCAGACACCAGCACUGA---|   A       U  A     A       U      GUUUCUU 
                     CCCG UUCGCUG GG AGACU GUGAUUU GUUGUU       C
                     GGGC GAGCGAC CC UCUGA CACUGAA CAACAG       U
AGAUGUGGUAAUCGGUUUCCC^   -       U  A     -       -      UCUUUCG 
  120       110       100         90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-7-P1a_5p

mirBase accession

MIMAT0001266

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

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Proposed targets

TargetScanFish: dre-miR-7a

Star sequence

Dre-Mir-7-P1a_3p*

mirBase accession

None

Sequence

42- CAACAAGUCACAGUCUACCUCA -64

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