Mir-7-P1

MirGeneDB ID

Ocu-Mir-7-P1

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

Paralogues

Ocu-Mir-7-P2 Ocu-Mir-7-P4

Orthologues

Aae-Mir-7 Aca-Mir-7-P1 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P1 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P1 Cfa-Mir-7-P1 Cin-Mir-7 Cja-Mir-7-P1 Cli-Mir-7-P1 Cmi-Mir-7-P1 Cpi-Mir-7-P1 Cpo-Mir-7-P1 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P1 Dre-Mir-7-P1a Dre-Mir-7-P1b Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Eca-Mir-7-P1 Esc-Mir-7 Ete-Mir-7-P1 Gga-Mir-7-P1 Gja-Mir-7-P1 Gmo-Mir-7-P1a Gmo-Mir-7-P1b Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Hsa-Mir-7-P1 Isc-Mir-7 Laf-Mir-7-P1 Lan-Mir-7 Lch-Mir-7-P1 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P1 Lpo-Mir-7 Mal-Mir-7-P1a Mdo-Mir-7-P1 Mgi-Mir-7 Mml-Mir-7-P1 Mmr-Mir-7-P1 Mmu-Mir-7-P1 Mom-Mir-7 Mun-Mir-7-P1e Mun-Mir-7-P1f Neu-Mir-7-P1 Npo-Mir-7 Oan-Mir-7-P1 Obi-Mir-7 Ofu-Mir-7 Ovu-Mir-7 Pab-Mir-7-P1 Pau-Mir-7 Pbv-Mir-7-P1 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o1 Pmi-Mir-7 Pve-Mir-7 Rno-Mir-7-P1 Rph-Mir-7 Sha-Mir-7-P1 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P1 Spu-Mir-7 Sro-Mir-7 Sto-Mir-7-P1 Tca-Mir-7 Tgu-Mir-7-P1 War-Mir-7 Xbo-Mir-7 Xla-Mir-7-P1c Xla-Mir-7-P1d Xtr-Mir-7-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(oryCun2_add)

1995007670: 164-225 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCCCCAGGACUGGACCGGCCAGCCCCGUCUGGAAGACUAGUGAUUUUGUUGUUGUCUCGCUGUGCUCAACAACAAGUCCCAGUCUGCCGCACGGUGCUGGCCAUGCAGCGGGUGCCCCUUU

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Structure

        10          20        30        40        50        60 
GCCCCCAGGACUGGACC--|      C    C   A     AGU     U      GUCUCG 
                   GGCCAGC CCGU UGG AGACU   GAUUU GUUGUU      C
                   CCGGUCG GGCA GCC UCUGA   CUGAA CAACAA      U
UUUCCCCGUGGGCGACGUA^      U    C   G     CC-     -      CUCGUG 
120       110       100        90        80          70

Deep sequencing

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Comment

Not in assembly but in trace archive.

3' NTU

Unknown

Motifs

Tissue expression

He	Ki	Te	To	Wh

Mature sequence

Ocu-Mir-7-P1_5p

mirBase accession

None

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

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Star sequence

Ocu-Mir-7-P1_3p*

mirBase accession

None

Sequence

40- CAACAAGUCCCAGUCUGCCGCA -62

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