Mir-7-P1

MirGeneDB ID

Bta-Mir-7-P1

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-7-1

Paralogues

Bta-Mir-7-P2 Bta-Mir-7-P4

Orthologues

Aae-Mir-7 Aca-Mir-7-P1 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P1 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Cfa-Mir-7-P1 Cin-Mir-7 Cja-Mir-7-P1 Cli-Mir-7-P1 Cmi-Mir-7-P1 Cpi-Mir-7-P1 Cpo-Mir-7-P1 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P1 Dre-Mir-7-P1a Dre-Mir-7-P1b Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Eca-Mir-7-P1 Esc-Mir-7 Ete-Mir-7-P1 Gga-Mir-7-P1 Gja-Mir-7-P1 Gmo-Mir-7-P1a Gmo-Mir-7-P1b Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Hsa-Mir-7-P1 Isc-Mir-7 Laf-Mir-7-P1 Lan-Mir-7 Lch-Mir-7-P1 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P1 Lpo-Mir-7 Mal-Mir-7-P1a Mdo-Mir-7-P1 Mgi-Mir-7 Mml-Mir-7-P1 Mmr-Mir-7-P1 Mmu-Mir-7-P1 Mom-Mir-7 Mun-Mir-7-P1e Mun-Mir-7-P1f Neu-Mir-7-P1 Npo-Mir-7 Oan-Mir-7-P1 Obi-Mir-7 Ocu-Mir-7-P1 Ofu-Mir-7 Ovu-Mir-7 Pab-Mir-7-P1 Pau-Mir-7 Pbv-Mir-7-P1 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o1 Pmi-Mir-7 Pve-Mir-7 Rno-Mir-7-P1 Rph-Mir-7 Sha-Mir-7-P1 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P1 Spu-Mir-7 Sro-Mir-7 Sto-Mir-7-P1 Tca-Mir-7 Tgu-Mir-7-P1 War-Mir-7 Xbo-Mir-7 Xla-Mir-7-P1c Xla-Mir-7-P1d Xtr-Mir-7-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037348.1: 19582956-19583016 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCUGCCGCCGUGGAGCAGCCAGCCCCGUCUGGAAGACUAGUGAUUUUGUUGUUGUCUCCUGCGCUCAACAACAAGUCCCAGUCUGCCGCAUGGUGCCGGCCACCGCAGCCGGGGCAGGGG

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Structure

        10          20        30        40        50        60 
CGCUGCCGCCGUGGAGCA--|  A  C    C   A     AGU     U      GUCUCC 
                    GCC GC CCGU UGG AGACU   GAUUU GUUGUU      \
                    CGG CG GGUA GCC UCUGA   CUGAA CAACAA      U
GGGGACGGGGCCGACGCCAC^  C  U    C   G     CC-     -      CUCGCG 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-7-P1_5p

mirBase accession

MIMAT0003843

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

Get sequence

Proposed targets

TargetScanVert: bta-miR-7

Star sequence

Bta-Mir-7-P1_3p*

mirBase accession

None

Sequence

39- CAACAAGUCCCAGUCUGCCGCA -61

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