Mir-7-P1

MirGeneDB ID

Cja-Mir-7-P1

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-7-P2 Cja-Mir-7-P4

Orthologues

Aae-Mir-7 Aca-Mir-7-P1 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P1 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P1 Cfa-Mir-7-P1 Cin-Mir-7 Cli-Mir-7-P1 Cmi-Mir-7-P1 Cpi-Mir-7-P1 Cpo-Mir-7-P1 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P1 Dre-Mir-7-P1a Dre-Mir-7-P1b Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Eca-Mir-7-P1 Esc-Mir-7 Ete-Mir-7-P1 Gga-Mir-7-P1 Gja-Mir-7-P1 Gmo-Mir-7-P1a Gmo-Mir-7-P1b Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Hsa-Mir-7-P1 Isc-Mir-7 Laf-Mir-7-P1 Lan-Mir-7 Lch-Mir-7-P1 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P1 Lpo-Mir-7 Mal-Mir-7-P1a Mdo-Mir-7-P1 Mgi-Mir-7 Mml-Mir-7-P1 Mmr-Mir-7-P1 Mmu-Mir-7-P1 Mom-Mir-7 Mun-Mir-7-P1e Mun-Mir-7-P1f Neu-Mir-7-P1 Npo-Mir-7 Oan-Mir-7-P1 Obi-Mir-7 Ocu-Mir-7-P1 Ofu-Mir-7 Ovu-Mir-7 Pab-Mir-7-P1 Pau-Mir-7 Pbv-Mir-7-P1 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o1 Pmi-Mir-7 Pve-Mir-7 Rno-Mir-7-P1 Rph-Mir-7 Sha-Mir-7-P1 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P1 Spu-Mir-7 Sro-Mir-7 Sto-Mir-7-P1 Tca-Mir-7 Tgu-Mir-7-P1 War-Mir-7 Xbo-Mir-7 Xla-Mir-7-P1c Xla-Mir-7-P1d Xtr-Mir-7-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021920.1: 16095771-16095832 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGGAUACAGAGUGGACCGGCUGCCCCGUCUGGAAGACUUGUGAUUUUGUUGUUGUCUUACUGCGCUCAACAACAAAUCCUAGUCUCCCGAAUGGUGCCAGCCAUCACAUCGGGGAGCGGGA

Get precursor sequence

Structure

        10         20         30        40        50        60 
CUGGAUACAGAGUGGACC-    -| C    C   A     UGU     U      GUCUUA 
                   GGCU GC CCGU UGG AGACU   GAUUU GUUGUU      C
                   CCGA CG GGUA GCC UCUGA   CUAAA CAACAA      U
AGGGCGAGGGGCUACACUA    C^ U    A   C     UC-     -      CUCGCG 
120       110       100        90        80          70

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Cja-Mir-7-P1_5p (predicted)

mirBase accession

None

Sequence

0- UGGAAGACUUGUGAUUUUGUUGUU -24

Get sequence

Star sequence

Cja-Mir-7-P1_3p* (predicted)

mirBase accession

None

Sequence

40- CAACAAAUCCUAGUCUCCCGAA -62

Get sequence