MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-7-P1

Family name MIR-7 (all species)
Seed GGAAGAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-7-P2  Cja-Mir-7-P4 
Orthologues Aae-Mir-7  Aca-Mir-7-P1  Aga-Mir-7  Agr-Mir-7  Ami-Mir-7-P1  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P1  Cfa-Mir-7-P1  Cin-Mir-7  Cli-Mir-7-P1  Cmi-Mir-7-P1  Cpi-Mir-7-P1  Cpo-Mir-7-P1  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P1  Dre-Mir-7-P1a  Dre-Mir-7-P1b  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Eca-Mir-7-P1  Esc-Mir-7  Ete-Mir-7-P1  Gga-Mir-7-P1  Gja-Mir-7-P1  Gmo-Mir-7-P1a  Gmo-Mir-7-P1b  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Hsa-Mir-7-P1  Isc-Mir-7  Laf-Mir-7-P1  Lan-Mir-7  Lch-Mir-7-P1  Lgi-Mir-7  Llo-Mir-7  Loc-Mir-7-P1  Lpo-Mir-7  Mal-Mir-7-P1a  Mdo-Mir-7-P1  Mgi-Mir-7  Mml-Mir-7-P1  Mmr-Mir-7-P1  Mmu-Mir-7-P1  Mom-Mir-7  Mun-Mir-7-P1e  Mun-Mir-7-P1f  Neu-Mir-7-P1  Npo-Mir-7  Oan-Mir-7-P1  Obi-Mir-7  Ocu-Mir-7-P1  Ofu-Mir-7  Ovu-Mir-7  Pab-Mir-7-P1  Pau-Mir-7  Pbv-Mir-7-P1  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pma-Mir-7-o1  Pmi-Mir-7  Pve-Mir-7  Rno-Mir-7-P1  Rph-Mir-7  Sha-Mir-7-P1  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spt-Mir-7-P1  Spu-Mir-7  Sro-Mir-7  Sto-Mir-7-P1  Tca-Mir-7  Tgu-Mir-7-P1  War-Mir-7  Xbo-Mir-7  Xla-Mir-7-P1c  Xla-Mir-7-P1d  Xtr-Mir-7-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021920.1: 16095771-16095832 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGGAUACAGAGUGGACCGGCUGCCCCGUCUGGAAGACUUGUGAUUUUGUUGUUGUCUUACUGCGCUCAACAACAAAUCCUAGUCUCCCGAAUGGUGCCAGCCAUCACAUCGGGGAGCGGGA
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Structure
        10         20         30        40        50        60 
CUGGAUACAGAGUGGACC-    -| C    C   A     UGU     U      GUCUUA 
                   GGCU GC CCGU UGG AGACU   GAUUU GUUGUU      C
                   CCGA CG GGUA GCC UCUGA   CUAAA CAACAA      U
AGGGCGAGGGGCUACACUA    C^ U    A   C     UC-     -      CUCGCG 
120       110       100        90        80          70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Cja-Mir-7-P1_5p (predicted)
mirBase accessionNone
Sequence 
0- UGGAAGACUUGUGAUUUUGUUGUU -24
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Star sequence

Cja-Mir-7-P1_3p* (predicted)
mirBase accessionNone
Sequence 
40- CAACAAAUCCUAGUCUCCCGAA -62
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