Mir-7-P1

MirGeneDB ID

Gga-Mir-7-P1

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-7-2

Paralogues

Gga-Mir-7-P2c Gga-Mir-7-P2d Gga-Mir-7-P4

Orthologues

Aae-Mir-7 Aca-Mir-7-P1 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P1 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P1 Cfa-Mir-7-P1 Cin-Mir-7 Cja-Mir-7-P1 Cli-Mir-7-P1 Cmi-Mir-7-P1 Cpi-Mir-7-P1 Cpo-Mir-7-P1 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P1 Dre-Mir-7-P1a Dre-Mir-7-P1b Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Eca-Mir-7-P1 Esc-Mir-7 Ete-Mir-7-P1 Gja-Mir-7-P1 Gmo-Mir-7-P1a Gmo-Mir-7-P1b Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Hsa-Mir-7-P1 Isc-Mir-7 Laf-Mir-7-P1 Lan-Mir-7 Lch-Mir-7-P1 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P1 Lpo-Mir-7 Mal-Mir-7-P1a Mdo-Mir-7-P1 Mgi-Mir-7 Mml-Mir-7-P1 Mmr-Mir-7-P1 Mmu-Mir-7-P1 Mom-Mir-7 Mun-Mir-7-P1e Mun-Mir-7-P1f Neu-Mir-7-P1 Npo-Mir-7 Oan-Mir-7-P1 Obi-Mir-7 Ocu-Mir-7-P1 Ofu-Mir-7 Ovu-Mir-7 Pab-Mir-7-P1 Pau-Mir-7 Pbv-Mir-7-P1 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o1 Pmi-Mir-7 Pve-Mir-7 Rno-Mir-7-P1 Rph-Mir-7 Sha-Mir-7-P1 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P1 Spu-Mir-7 Sro-Mir-7 Sto-Mir-7-P1 Tca-Mir-7 Tgu-Mir-7-P1 War-Mir-7 Xbo-Mir-7 Xla-Mir-7-P1c Xla-Mir-7-P1d Xtr-Mir-7-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

10: 13575956-13576019 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7-P1)

Mir-1720 10: 13575806-13575866 [-] UCSC Ensembl
Mir-7-P1 10: 13575956-13576019 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCACGGGACAAGGACGGCCGCGGUGCCCUCUGGAAGACUAGUGAUUUUGUUGUUGUAUGGCUCAUCCCACCACAACAAGUCACAGUCUGCCUUAGGGCGCACGGCCCCGCCGGCGCUGCAGGAG

Get precursor sequence

Structure

        10           20        30        40        50        60  
UCACGGGACAAGGACGG---|  CG       CU  A     A       U     UGUAUGGC 
                    CCG  GUGCCCU  GG AGACU GUGAUUU GUUGU        U
                    GGC  CGCGGGA  CC UCUGA CACUGAA CAACA        C
GAGGACGUCGCGGCCGCCCC^  A-       UU  G     -       -     CCACCCUA 
  120       110        100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-7-P1_5p

mirBase accession

MIMAT0001157

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

Get sequence

Proposed targets

TargetScanVert: gga-miR-7
miRDB: MIMAT0001157

Star sequence

Gga-Mir-7-P1_3p*

mirBase accession

None

Sequence

42- CAACAAGUCACAGUCUGCCUUA -64

Get sequence