MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-1720

Family name MIR-1720 (all species)
Seed AAGCAAC
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-1720
Paralogues
Orthologues Aca-Mir-1720  Ami-Mir-1720  Cli-Mir-1720  Cpi-Mir-1720  Gja-Mir-1720  Pbv-Mir-1720  Spt-Mir-1720  Tgu-Mir-1720 
Node of Origin (locus) Diapsida
Node of Origin (family) Diapsida
Genome context
(Gallus_gallus.GRCg6a)		 10: 13575806-13575866 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1720)		 Mir-1720 10: 13575806-13575866 [-] UCSC Ensembl
Mir-7-P1 10: 13575956-13576019 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGGCUGCUCCCGGAUCCCUCUCCACUUCUGAUCACCUCGGACGUUGCUUUGGUGACAACCCGGAGCAAAGCAACGAGAGGUCGGUCUGAAACACCACUGCUGCUGCAGCUGGAGCUGCC
Get precursor sequence
Structure
        10        20          30         40        50        60
UUGGGCUGCUCCCGGAUCCCUCUCCAC--   U    -|    GGA          GUGACA 
                             UUC GAUC ACCUC   CGUUGCUUUG      A
                             AAG CUGG UGGAG   GCAACGAAAC      C
CCGUCGAGGUCGACGUCGUCGUCACCACA   U    C^    A--          GAGGCC 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-1720_5p*
mirBase accessionMIMAT0007617
Sequence 
0- UGAUCACCUCGGACGUUGCUUUGG -24
Get sequence
Proposed targets TargetScanVert: gga-miR-1720-5p
miRDB: MIMAT0007617
Mature sequence

Gga-Mir-1720_3p
mirBase accessionMIMAT0007618
Sequence 
38- AAAGCAACGAGAGGUCGGUCUGA -61
Get sequence
Proposed targets TargetScanVert: gga-miR-1720-3p
miRDB: MIMAT0007618