MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-1720

Family name MIR-1720 (all species)
Seed GAUCACC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-1720
Paralogues
Orthologues Aca-Mir-1720  Cli-Mir-1720  Cpi-Mir-1720  Gga-Mir-1720  Gja-Mir-1720  Pbv-Mir-1720  Spt-Mir-1720  Tgu-Mir-1720 
Node of Origin (locus) Diapsida
Node of Origin (family) Diapsida
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017713709.1: 11914848-11914910 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-1720)
Mir-7-P1 NW_017713709.1: 11914595-11914658 [+] UCSC
Mir-1720 NW_017713709.1: 11914848-11914910 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGGGGCUGCUGCAUGCCUCCUCUCUGCUUCUGAUCACCUCAGUUGUUGCUUUUGUGAGCAUUUCAUGGGAAAGCAACAAGAGGGCAGGUCUGAAACCCACACCGACAUCUGGCAUGGCAUGCA
Get precursor sequence
Structure
        10        20          30          40        50        60 
AGGGGCUGCUGCAUGCCUCCUCUCUGC--   U    A--|   AG           GUGAGCA 
                             UUC GAUC   CCUC  UUGUUGCUUUU       \
                             AAG CUGG   GGAG  AACAACGAAAG       U
ACGUACGGUACGGUCUACAGCCACACCCA   U    ACG^   --           GGUACUU 
 120       110       100        90        80          70
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
To
Mature sequence

Ami-Mir-1720_5p (predicted)

mirBase accessionNone
Sequence
0- UGAUCACCUCAGUUGUUGCUUUU -23
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Star sequence

Ami-Mir-1720_3p* (predicted)

mirBase accessionMIMAT0038324
Sequence
40- AAGCAACAAGAGGGCAGGUCUGA -63
Get sequence