Mir-7-P1

MirGeneDB ID

Rno-Mir-7-P1

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-7a-2

Paralogues

Rno-Mir-7-P2 Rno-Mir-7-P4

Orthologues

Aae-Mir-7 Aca-Mir-7-P1 Ami-Mir-7-P1 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P1 Cfa-Mir-7-P1 Cgi-Mir-7 Cin-Mir-7 Cli-Mir-7-P1 Cmi-Mir-7-P1 Cpi-Mir-7-P1 Cpo-Mir-7-P1 Cte-Mir-7 Dan-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P1 Dre-Mir-7-P1a Dre-Mir-7-P1b Dsi-Mir-7 Dya-Mir-7 Esc-Mir-7 Ete-Mir-7-P1 Gga-Mir-7-P1 Gja-Mir-7-P1 Gmo-Mir-7-P1a Gmo-Mir-7-P1b Hme-Mir-7 Hsa-Mir-7-P1 Isc-Mir-7 Lan-Mir-7 Lch-Mir-7-P1 Lgi-Mir-7 Loc-Mir-7-P1 Lpo-Mir-7 Mal-Mir-7-P1a Mdo-Mir-7-P1 Mml-Mir-7-P1 Mmu-Mir-7-P1 Mun-Mir-7-P1e Mun-Mir-7-P1f Npo-Mir-7 Oan-Mir-7-P1 Obi-Mir-7 Ocu-Mir-7-P1 Ovu-Mir-7 Pbv-Mir-7-P1 Pfl-Mir-7 Pma-Mir-7-o1 Pmi-Mir-7 Sha-Mir-7-P1 Sko-Mir-7 Spt-Mir-7-P1 Spu-Mir-7 Sto-Mir-7-P1 Tca-Mir-7 Tgu-Mir-7-P1 Xbo-Mir-7 Xla-Mir-7-P1c Xla-Mir-7-P1d Xtr-Mir-7-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr1: 140576414-140576473 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAGCAAGUCCAUGGACAGACCAGCCCUGUCUGGAAGACUAGUGAUUUUGUUGUUGUGUCUGUGUCCAACAACAAGUCCCAGUCUGCCACAUGGUGUUGGUCACAUCAGCAACUGCAGGGA

Get precursor sequence

Structure

        10          20        30        40        50        60
UAGCAAGUCCAUGGACA--|      C    C   A     AGU     U      GUGUC 
                   GACCAGC CUGU UGG AGACU   GAUUU GUUGUU     U
                   CUGGUUG GGUA ACC UCUGA   CUGAA CAACAA     G
AGGGACGUCAACGACUACA^      U    C   G     CC-     -      CCUGU 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Mature sequence

Rno-Mir-7-P1_5p

mirBase accession

MIMAT0000606

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000606
TargetScanVert: rno-miR-7a-5p
miRDB: MIMAT0000606

Star sequence

Rno-Mir-7-P1_3p*

mirBase accession

MIMAT0017091

Sequence

38- CAACAAGUCCCAGUCUGCCACA -60

Get sequence

Proposed targets

TargetScanVert: rno-miR-7a-2-3p
miRDB: MIMAT0017091