MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-7-P4

Family name MIR-7 (all species)
Seed GGAAGAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-7-P1  Cja-Mir-7-P2 
Orthologues Aae-Mir-7  Aca-Mir-7-P4  Aga-Mir-7  Agr-Mir-7  Ami-Mir-7-P4  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P4  Cfa-Mir-7-P4  Cin-Mir-7  Cli-Mir-7-P4  Cmi-Mir-7-P4  Cpi-Mir-7-P4  Cpo-Mir-7-P4  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P4  Dre-Mir-7-P4b  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Eca-Mir-7-P4  Esc-Mir-7  Ete-Mir-7-P4  Gga-Mir-7-P4  Gja-Mir-7-P4  Gmo-Mir-7-P4a  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Hsa-Mir-7-P4  Isc-Mir-7  Laf-Mir-7-P4  Lan-Mir-7  Lch-Mir-7-P4  Lgi-Mir-7  Llo-Mir-7  Loc-Mir-7-P4  Loc-Mir-7-P4-as  Lpo-Mir-7  Mal-Mir-7-P4a  Mdo-Mir-7-P4  Mgi-Mir-7  Mml-Mir-7-P4  Mmr-Mir-7-P4  Mmu-Mir-7-P4  Mom-Mir-7  Mun-Mir-7-P4  Neu-Mir-7-P4  Npo-Mir-7  Obi-Mir-7  Ocu-Mir-7-P4  Ofu-Mir-7  Ovu-Mir-7  Pab-Mir-7-P4  Pau-Mir-7  Pbv-Mir-7-P4  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pma-Mir-7-o4  Pmi-Mir-7  Pve-Mir-7  Rno-Mir-7-P4  Rph-Mir-7  Sha-Mir-7-P4  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spt-Mir-7-P4  Spu-Mir-7  Sro-Mir-7  Sto-Mir-7-P4  Tca-Mir-7  Tgu-Mir-7-P4  War-Mir-7  Xbo-Mir-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021936.1: 4147433-4147492 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUUAGAGUGGCUAUGGUCUAGUGCUGUGUGGAAGACUAGUGAUUUUGUUGUUCUGAUGUACUAUGACAACAAGUCACAGCCGGCCUCAUAGCGCAGACUCCCAUCGACCUUCGCCUAA
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Structure
        10           20        30        40        50        60
UGAUUAGAGUGGCUAUG---|   A        U  AAGA  A       U      CUGAU 
                    GUCU GUGCUGUG GG    CU GUGAUUU GUUGUU     G
                    CAGA CGCGAUAC CC    GA CACUGAA CAACAG     U
AAUCCGCUUCCAGCUACCCU^   -        U  GGCC  -       -      UAUCA 
.       110       100         90        80          70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Cja-Mir-7-P4_5p
mirBase accessionNone
Sequence 
0- UGGAAGACUAGUGAUUUUGUUGUU -24
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Star sequence

Cja-Mir-7-P4_3p* (predicted)
mirBase accessionNone
Sequence 
38- CAACAAGUCACAGCCGGCCUCA -60
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