Mir-7-P4

MirGeneDB ID

Cfa-Mir-7-P4

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-7-3

Paralogues

Cfa-Mir-7-P1 Cfa-Mir-7-P2

Orthologues

Aae-Mir-7 Aca-Mir-7-P4 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P4 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P4 Cin-Mir-7 Cja-Mir-7-P4 Cli-Mir-7-P4 Cmi-Mir-7-P4 Cpi-Mir-7-P4 Cpo-Mir-7-P4 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P4 Dre-Mir-7-P4b Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Eca-Mir-7-P4 Esc-Mir-7 Ete-Mir-7-P4 Gga-Mir-7-P4 Gja-Mir-7-P4 Gmo-Mir-7-P4a Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Hsa-Mir-7-P4 Isc-Mir-7 Laf-Mir-7-P4 Lan-Mir-7 Lch-Mir-7-P4 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P4 Loc-Mir-7-P4-as Lpo-Mir-7 Mal-Mir-7-P4a Mdo-Mir-7-P4 Mgi-Mir-7 Mml-Mir-7-P4 Mmr-Mir-7-P4 Mmu-Mir-7-P4 Mom-Mir-7 Mun-Mir-7-P4 Neu-Mir-7-P4 Npo-Mir-7 Obi-Mir-7 Ocu-Mir-7-P4 Ofu-Mir-7 Ovu-Mir-7 Pab-Mir-7-P4 Pau-Mir-7 Pbv-Mir-7-P4 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o4 Pmi-Mir-7 Pve-Mir-7 Rno-Mir-7-P4 Rph-Mir-7 Sha-Mir-7-P4 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P4 Spu-Mir-7 Sro-Mir-7 Sto-Mir-7-P4 Tca-Mir-7 Tgu-Mir-7-P4 War-Mir-7 Xbo-Mir-7

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(canFam3_add)

chr20: 54993205-54993263 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGACUGGAGUGGUUGUGGUCUAGUGCUGUGUGGAAGACUAGUGAUUUUGUUGUUCUGAUGUACUAUGACAACAAGUCACAGCUUCCUCAUAGCGUGGACUCCCGUCGGCCUCUGCCUGA

Get precursor sequence

Structure

        10           20        30        40        50        60
AGACUGGAGUGGUUGUG---|    G       U     A  A       U      CUGAU 
                    GUCUA UGCUGUG GGAAG CU GUGAUUU GUUGUU     G
                    CAGGU GCGAUAC CCUUC GA CACUGAA CAACAG     U
AGUCCGUCUCCGGCUGCCCU^    -       U     -  -       -      UAUCA 
       110       100         90         80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-7-P4_5p

mirBase accession

MIMAT0006634

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

Get sequence

Proposed targets

TargetScanVert: cfa-miR-7
miRDB: MIMAT0006634

Star sequence

Cfa-Mir-7-P4_3p*

mirBase accession

None

Sequence

38- CAACAAGUCACAGCUUCCUCA -59

Get sequence