Mir-7-P4

MirGeneDB ID

Cmi-Mir-7-P4

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-7-P1 Cmi-Mir-7-P2

Orthologues

Aae-Mir-7 Aca-Mir-7-P4 Ami-Mir-7-P4 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P4 Cfa-Mir-7-P4 Cgi-Mir-7 Cin-Mir-7 Cli-Mir-7-P4 Cpi-Mir-7-P4 Cpo-Mir-7-P4 Cte-Mir-7 Dan-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P4 Dre-Mir-7-P4b Dsi-Mir-7 Dya-Mir-7 Esc-Mir-7 Ete-Mir-7-P4 Gga-Mir-7-P4 Gja-Mir-7-P4 Gmo-Mir-7-P4a Hme-Mir-7 Hsa-Mir-7-P4 Isc-Mir-7 Lan-Mir-7 Lch-Mir-7-P4 Lgi-Mir-7 Loc-Mir-7-P4 Loc-Mir-7-P4-as Lpo-Mir-7 Mal-Mir-7-P4a Mdo-Mir-7-P4 Mml-Mir-7-P4 Mmu-Mir-7-P4 Mun-Mir-7-P4 Npo-Mir-7 Obi-Mir-7 Ocu-Mir-7-P4 Ovu-Mir-7 Pbv-Mir-7-P4 Pfl-Mir-7 Pma-Mir-7-o4 Pmi-Mir-7 Rno-Mir-7-P4 Sha-Mir-7-P4 Sko-Mir-7 Spt-Mir-7-P4 Spu-Mir-7 Sto-Mir-7-P4 Tca-Mir-7 Tgu-Mir-7-P4 Xbo-Mir-7

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635939.1: 2080169-2080230 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCACUGCAAUCCUCGGACUGGUUCUGCGUGGAAGACUAGUGAUUUUGUUGUUUUCUCUAUUGAUGUGACAACAAGUCAUAGUCUGCCACACAGCACAGGCCAAAGCGUCAGCAAGAACAU

Get precursor sequence

Structure

        10           20        30        40        50        60 
CUCCACUGCAAUCCUCGGA---|  GUU   C    A      G      U      UUCUCU 
                      CUG   CUG GUGG AGACUA UGAUUU GUUGUU      A
                      GAC   GAC CACC UCUGAU ACUGAA CAACAG      U
UACAAGAACGACUGCGAAACCG^  AC-   A    G      -      -      UGUAGU 
120       110       100         90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-7-P4_5p

mirBase accession

None

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

Get sequence

Star sequence

Cmi-Mir-7-P4_3p*

mirBase accession

None

Sequence

40- CAACAAGUCAUAGUCUGCCACA -62

Get sequence