MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-7-o4

Family name MIR-7 (all species)
Seed GGAAGAC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-7-o1  Pma-Mir-7-o2  Pma-Mir-7-o3 
Orthologues Aae-Mir-7  Aca-Mir-7-P4  Aga-Mir-7  Agr-Mir-7  Ami-Mir-7-P4  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P4  Cfa-Mir-7-P4  Cin-Mir-7  Cja-Mir-7-P4  Cli-Mir-7-P4  Cmi-Mir-7-P4  Cpi-Mir-7-P4  Cpo-Mir-7-P4  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P4  Dre-Mir-7-P4b  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Eca-Mir-7-P4  Esc-Mir-7  Ete-Mir-7-P4  Gga-Mir-7-P4  Gja-Mir-7-P4  Gmo-Mir-7-P4a  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Hsa-Mir-7-P4  Isc-Mir-7  Laf-Mir-7-P4  Lan-Mir-7  Lch-Mir-7-P4  Lgi-Mir-7  Llo-Mir-7  Loc-Mir-7-P4  Loc-Mir-7-P4-as  Lpo-Mir-7  Mal-Mir-7-P4a  Mdo-Mir-7-P4  Mgi-Mir-7  Mml-Mir-7-P4  Mmr-Mir-7-P4  Mmu-Mir-7-P4  Mom-Mir-7  Mun-Mir-7-P4  Neu-Mir-7-P4  Npo-Mir-7  Obi-Mir-7  Ocu-Mir-7-P4  Ofu-Mir-7  Ovu-Mir-7  Pab-Mir-7-P4  Pau-Mir-7  Pbv-Mir-7-P4  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pmi-Mir-7  Pve-Mir-7  Rno-Mir-7-P4  Rph-Mir-7  Sha-Mir-7-P4  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spt-Mir-7-P4  Spu-Mir-7  Sro-Mir-7  Sto-Mir-7-P4  Tca-Mir-7  Tgu-Mir-7-P4  War-Mir-7  Xbo-Mir-7 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046069.1: 32625068-32625130 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGACGUAGCUGCGCUGGGCCGUGCCGCGUGGAAGACUUGUGAUUUUGUUGUUAUCGUCGUUAUCACGAGCGACAAGUCACAGUCUGCCUCACGGAACGUGCCGACAUCGUCUGCGAGGAGA
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Structure
        10         20         30        40        50        60  
AGAGACGUAGCUGCGCUG-   -|  G   CGU  A     U       U      AUCGUCG 
                   GGC CGU CCG   GG AGACU GUGAUUU GUUGUU       \
                   CCG GCA GGC   CC UCUGA CACUGAA CAGCGA       U
AGAGGAGCGUCUGCUACAG   U^  A   ACU  G     -       -      GCACUAU 
 120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-7-o4_5p
mirBase accessionNone
Sequence 
0- UGGAAGACUUGUGAUUUUGUUGUU -24
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Star sequence

Pma-Mir-7-o4_3p* (predicted)
mirBase accessionNone
Sequence 
41- CGACAAGUCACAGUCUGCCUCA -63
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