Mir-7-P4b

MirGeneDB ID

Dre-Mir-7-P4b

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-7a-3

Paralogues

Dre-Mir-7-P1a Dre-Mir-7-P1b Dre-Mir-7-P2b Dre-Mir-7-P3

Orthologues

Aae-Mir-7 Aca-Mir-7-P4 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P4 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P4 Cfa-Mir-7-P4 Cin-Mir-7 Cja-Mir-7-P4 Cli-Mir-7-P4 Cmi-Mir-7-P4 Cpi-Mir-7-P4 Cpo-Mir-7-P4 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P4 Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Eca-Mir-7-P4 Esc-Mir-7 Ete-Mir-7-P4 Gga-Mir-7-P4 Gja-Mir-7-P4 Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Hsa-Mir-7-P4 Isc-Mir-7 Laf-Mir-7-P4 Lan-Mir-7 Lch-Mir-7-P4 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P4 Loc-Mir-7-P4-as Lpo-Mir-7 Mdo-Mir-7-P4 Mgi-Mir-7 Mml-Mir-7-P4 Mmr-Mir-7-P4 Mmu-Mir-7-P4 Mom-Mir-7 Mun-Mir-7-P4 Neu-Mir-7-P4 Npo-Mir-7 Obi-Mir-7 Ocu-Mir-7-P4 Ofu-Mir-7 Ovu-Mir-7 Pab-Mir-7-P4 Pau-Mir-7 Pbv-Mir-7-P4 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o4 Pmi-Mir-7 Pve-Mir-7 Rno-Mir-7-P4 Rph-Mir-7 Sha-Mir-7-P4 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P4 Spu-Mir-7 Sro-Mir-7 Sto-Mir-7-P4 Tca-Mir-7 Tgu-Mir-7-P4 War-Mir-7 Xbo-Mir-7

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr8: 10232-10295 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGUGUGUGUGUGUUCUGCCCUCUGCGGAGUGGAAGACUAGUGAUUUUGUUGUGAAAAUGAACAAAAACCAACAACAAACCGCAGUCGUCCUCUCAGCACGGGGCCCACACCUGCAGAGCACAG

Get precursor sequence

Structure

        10          20        30        40        50        60  
GUGUGUGUGUGUGUUCU--|    C   G   U   A    A   AU        GAAAAUGA 
                   GCCCU UGC GAG GGA GACU GUG  UUUGUUGU        A
                   CGGGG ACG CUC CCU CUGA CGC  AAACAACA        C
GACACGAGACGUCCACACC^    C   A   U   G    -   C-        ACCAAAAA 
  120       110       100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-7-P4b_5p

mirBase accession

MIMAT0001266

Sequence

0- UGGAAGACUAGUGAUUUUGUUGU -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-7a

Star sequence

Dre-Mir-7-P4b_3p*

mirBase accession

None

Sequence

43- AACAAACCGCAGUCGUCCUCU -64

Get sequence