| MirGeneDB ID | Efe-Mir-7-P13 |
|---|
| Family name |
MIR-7 (all species) |
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| Seed |
GGAAGAC |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-7-P11
Efe-Mir-7-P12
|
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| Orthologues |
Aae-Mir-7
Aga-Mir-7
Agr-Mir-7
Asu-Mir-7
Bfl-Mir-7
Bge-Mir-7
Bla-Mir-7
Cin-Mir-7
Cte-Mir-7
Dan-Mir-7
Dlo-Mir-7
Dma-Mir-7
Dme-Mir-7
Dmo-Mir-7
Dsi-Mir-7
Dya-Mir-7
Eba-Mir-7
Esc-Mir-7
Gpa-Mir-7
Gsa-Mir-7
Gsp-Mir-7
Hme-Mir-7
Hmi-Mir-7
Hru-Mir-7
Isc-Mir-7
Lan-Mir-7
Lgi-Mir-7
Llo-Mir-7
Lpo-Mir-7
Mgi-Mir-7
Mom-Mir-7
Npo-Mir-7
Obi-Mir-7
Ofu-Mir-7
Ovu-Mir-7
Pau-Mir-7
Pca-Mir-7
Pcr-Mir-7
Pdu-Mir-7
Pfl-Mir-7
Pmi-Mir-7
Pve-Mir-7
Rph-Mir-7
Sko-Mir-7
Sne-Mir-7
Snu-Mir-7
Spu-Mir-7
Sro-Mir-7
Tca-Mir-7
War-Mir-7
Xbo-Mir-7
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(Efe_combined) |
Efet.01.297570: 2753-2810 [-]
|
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Precursor
(pre-Mir +30nt flank) |
UCCGGUCACGUGCUUCUGUCCUGUCAAGUAUGGAAGACUUGUGAUUUUGUUGUCUGAUAGCUAAACAACAUGUCACAGUCUUUCCUCACCGUGCAGUGACUCCAACGCCCUCGCGUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCCGGUCACGUGCUUCU- - CAA AU -| U UU CUGAU
GUC CUGU GU GG AAGACU GUGAU UGUUGU \
CAG GACG CA CC UUCUGA CACUG ACAACA A
GGUGCGCUCCCGCAACCU U UGC CU U^ - U- AAUCG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Efe-Mir-7-P13_5p |
| mirBase accession | None |
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| Sequence |
0- UGGAAGACUUGUGAUUUUGUUGUC -24
Get sequence
|
|---|
| Star sequence |
Efe-Mir-7-P13_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- CAACAUGUCACAGUCUUUCCUCA -58
Get sequence
|
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