| MirGeneDB ID | Efe-Mir-7-P12 |
|---|
| Family name |
MIR-7 (all species) |
|---|
| Seed |
GGAAGAC |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Efe-Mir-7-P11
Efe-Mir-7-P13
|
|---|
| Orthologues |
Aae-Mir-7
Asu-Mir-7
Bfl-Mir-7
Bge-Mir-7
Bla-Mir-7
Cgi-Mir-7
Cin-Mir-7
Cte-Mir-7
Dan-Mir-7
Dma-Mir-7
Dme-Mir-7
Dmo-Mir-7
Dsi-Mir-7
Dya-Mir-7
Esc-Mir-7
Hme-Mir-7
Isc-Mir-7
Lan-Mir-7
Lgi-Mir-7
Lpo-Mir-7
Npo-Mir-7
Obi-Mir-7
Ovu-Mir-7
Pfl-Mir-7
Pmi-Mir-7
Sko-Mir-7
Spu-Mir-7
Tca-Mir-7
Xbo-Mir-7
|
|---|
| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(Efe_combined) |
Efet.01.613966: 1312-1375 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUGCCGAAACAGGAUAUUGCCGUCGUUGUCUGGAAGACUUGUGAUUUUGUUGCUGUAUCUUUGCAUCCCAGCAACGAGUCCACGUCUUCAAAGAUGGCGACUUGGCGAAGACACCAACGACACC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUGCCGAAACAGGAUAUU -- UG G-| UU AU GUAUCUU
GCC GUCGU UCU GAAGAC GUG UUUGUUGCU \
CGG CAGCG AGA CUUCUG CAC GAGCAACGA U
CCACAGCAACCACAGAAG UU GU AA^ -- CU CCCUACG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Efe-Mir-7-P12_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGGAAGACUUGUGAUUUUGUUGCU -24
Get sequence
|
|---|
| Star sequence |
Efe-Mir-7-P12_3p* |
| mirBase accession | None |
|---|
| Sequence |
41- CAACGAGUCCACGUCUUCAAAGA -64
Get sequence
|
|---|
