| MirGeneDB ID | Dpu-Mir-7-P9 |
|---|
| Family name |
MIR-7 (all species) |
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| Seed |
GGAAGAC |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
dpu-mir-7
|
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| Paralogues |
Dpu-Mir-7-P10
|
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| Orthologues |
Aae-Mir-7
Aga-Mir-7
Agr-Mir-7
Asu-Mir-7
Bfl-Mir-7
Bge-Mir-7
Bla-Mir-7
Cin-Mir-7
Cte-Mir-7
Dan-Mir-7
Dlo-Mir-7
Dma-Mir-7
Dme-Mir-7
Dmo-Mir-7
Dsi-Mir-7
Dya-Mir-7
Eba-Mir-7
Esc-Mir-7
Gpa-Mir-7
Gsa-Mir-7
Gsp-Mir-7
Hme-Mir-7
Hmi-Mir-7
Hru-Mir-7
Isc-Mir-7
Lan-Mir-7
Lgi-Mir-7
Llo-Mir-7
Lpo-Mir-7
Mgi-Mir-7
Mom-Mir-7
Npo-Mir-7
Obi-Mir-7
Ofu-Mir-7
Ovu-Mir-7
Pau-Mir-7
Pca-Mir-7
Pcr-Mir-7
Pdu-Mir-7
Pfl-Mir-7
Pmi-Mir-7
Pve-Mir-7
Rph-Mir-7
Sko-Mir-7
Sne-Mir-7
Snu-Mir-7
Spu-Mir-7
Sro-Mir-7
Tca-Mir-7
War-Mir-7
Xbo-Mir-7
|
|---|
| Node of Origin (locus) |
D. pulex
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_191: 112550-112613 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUGGUGUCUCGGCCUCCGGCUGUUGUGGUAUGGAAGACUAGUGAUUUUGUUGUUCGGCAUAAAGACCGGUAACAAAAAAUCUCUAGUUCACCUACCAAGGCAGUUGCAUUCUUCACCGGGCGAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUGGUGUCUCGGCCUCC--| UG U AA U G CGGCAUA
GGCUGU UGGUA GG GACUAG GAUUUU UUGUU A
UUGACG ACCAU CC UUGAUC CUAAAA AACAA A
CAGCGGGCCACUUCUUACG^ GA - AC U - UGGCCAG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Dpu-Mir-7-P9_5p |
| mirBase accession | MIMAT0012666 |
|---|
| Sequence |
0- UGGAAGACUAGUGAUUUUGUUGUU -24
Get sequence
|
|---|
| Star sequence |
Dpu-Mir-7-P9_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- CAAAAAAUCUCUAGUUCACCUA -64
Get sequence
|
|---|
