MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-7-P2

Family name MIR-7 (all species)
Seed GGAAGAC
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-7-P1  Lch-Mir-7-P3  Lch-Mir-7-P4 
Orthologues Aae-Mir-7  Aca-Mir-7-P2  Aga-Mir-7  Agr-Mir-7  Ami-Mir-7-P2  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P2  Cfa-Mir-7-P2  Cin-Mir-7  Cja-Mir-7-P2  Cli-Mir-7-P2  Cmi-Mir-7-P2  Cpi-Mir-7-P2  Cpo-Mir-7-P2  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P2  Dre-Mir-7-P2b  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Eca-Mir-7-P2  Esc-Mir-7  Ete-Mir-7-P2  Gga-Mir-7-P2c  Gga-Mir-7-P2d  Gja-Mir-7-P2  Gmo-Mir-7-P2a  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Hsa-Mir-7-P2  Isc-Mir-7  Laf-Mir-7-P2  Lan-Mir-7  Lgi-Mir-7  Llo-Mir-7  Loc-Mir-7-P2  Lpo-Mir-7  Mal-Mir-7-P2a  Mdo-Mir-7-P2  Mgi-Mir-7  Mml-Mir-7-P2  Mmr-Mir-7-P2  Mmu-Mir-7-P2  Mom-Mir-7  Mun-Mir-7-P2  Neu-Mir-7-P2  Npo-Mir-7  Oan-Mir-7-P2  Obi-Mir-7  Ocu-Mir-7-P2  Ofu-Mir-7  Ovu-Mir-7  Pab-Mir-7-P2  Pau-Mir-7  Pbv-Mir-7-P2  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pma-Mir-7-o2  Pmi-Mir-7  Pve-Mir-7  Rno-Mir-7-P2  Rph-Mir-7  Sha-Mir-7-P2  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spt-Mir-7-P2  Spu-Mir-7  Sro-Mir-7  Sto-Mir-7-P2  Tca-Mir-7  Tgu-Mir-7-P2  War-Mir-7  Xbo-Mir-7  Xla-Mir-7-P2e  Xla-Mir-7-P2f  Xtr-Mir-7-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH128460.1: 223089-223152 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAUUGUCUUGAAUCUGGUCUAGUUCUGUGUGGAAGACUAGUGAUUUUGUUGUUUUUAGGUAACUGCAUUGACAACAAAUCACAGUCUACCAUAUAGCACAGGCCAUGCUUCUACAGAGCAAGU
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Structure
        10           20        30        40        50        60  
AGAUUGUCUUGAAUCUG---|   A  U        A     A       U      UUUAGGU 
                    GUCU GU CUGUGUGG AGACU GUGAUUU GUUGUU       A
                    CGGA CA GAUAUACC UCUGA CACUAAA CAACAG       A
UGAACGAGACAUCUUCGUAC^   -  C        A     -       -      UUACGUC 
  120       110        100        90         80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-7-P2_5p (predicted)
mirBase accessionNone
Sequence 
0- UGGAAGACUAGUGAUUUUGUUGUU -24
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Star sequence

Lch-Mir-7-P2_3p* (predicted)
mirBase accessionNone
Sequence 
42- CAACAAAUCACAGUCUACCAUA -64
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