MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-7-P2a

Family name MIR-7 (all species)
Seed GGAAGAC
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-7-P1a  Mal-Mir-7-P3  Mal-Mir-7-P4a 
Orthologues Aae-Mir-7  Aca-Mir-7-P2  Ami-Mir-7-P2  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P2  Cfa-Mir-7-P2  Cgi-Mir-7  Cin-Mir-7  Cli-Mir-7-P2  Cmi-Mir-7-P2  Cpi-Mir-7-P2  Cpo-Mir-7-P2  Cte-Mir-7  Dan-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P2  Dsi-Mir-7  Dya-Mir-7  Esc-Mir-7  Ete-Mir-7-P2  Gja-Mir-7-P2  Gmo-Mir-7-P2a  Hme-Mir-7  Hsa-Mir-7-P2  Isc-Mir-7  Lan-Mir-7  Lch-Mir-7-P2  Lgi-Mir-7  Loc-Mir-7-P2  Lpo-Mir-7  Mdo-Mir-7-P2  Mml-Mir-7-P2  Mmu-Mir-7-P2  Mun-Mir-7-P2  Npo-Mir-7  Oan-Mir-7-P2  Obi-Mir-7  Ocu-Mir-7-P2  Ovu-Mir-7  Pbv-Mir-7-P2  Pfl-Mir-7  Pma-Mir-7-o2  Pmi-Mir-7  Rno-Mir-7-P2  Sha-Mir-7-P2  Sko-Mir-7  Spt-Mir-7-P2  Spu-Mir-7  Sto-Mir-7-P2  Tca-Mir-7  Tgu-Mir-7-P2  Xbo-Mir-7  Xtr-Mir-7-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884744.1: 966770-966833 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAUUGAUUCUUCCCCUGGCUGCUGCUGUGUGGAAGACUAGUGAUUUUGUUGUUUUUAGUUAGAUCAACCGACAACAAAUCACAGUCUGCCAAAUAGCAUGGGCUCCUCCUCUUCUGUCUCCCU
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Structure
        10          20        30        40        50        60  
GGAUUGAUUCUUCCCCU--|   GC      G   A     A       U      UUUAGUU 
                   GGCU  UGCUGU UGG AGACU GUGAUUU GUUGUU       A
                   UCGG  ACGAUA ACC UCUGA CACUAAA CAACAG       G
UCCCUCUGUCUUCUCCUCC^   GU      A   G     -       -      CCAACUA 
  120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-7-P2a_5p

mirBase accessionNone
Sequence
0- UGGAAGACUAGUGAUUUUGUUGUU -24
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Star sequence

Mal-Mir-7-P2a_3p*

mirBase accessionNone
Sequence
42- CAACAAAUCACAGUCUGCCAAA -64
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