MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-7-P2a

Family name MIR-7 (all species)
Seed GGAAGAC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-7a-1
Paralogues Gmo-Mir-7-P1a  Gmo-Mir-7-P1b  Gmo-Mir-7-P3  Gmo-Mir-7-P4a 
Orthologues Aae-Mir-7  Aca-Mir-7-P2  Aga-Mir-7  Agr-Mir-7  Ami-Mir-7-P2  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P2  Cfa-Mir-7-P2  Cin-Mir-7  Cja-Mir-7-P2  Cli-Mir-7-P2  Cmi-Mir-7-P2  Cpi-Mir-7-P2  Cpo-Mir-7-P2  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P2  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Eca-Mir-7-P2  Esc-Mir-7  Ete-Mir-7-P2  Gja-Mir-7-P2  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Hsa-Mir-7-P2  Isc-Mir-7  Laf-Mir-7-P2  Lan-Mir-7  Lch-Mir-7-P2  Lgi-Mir-7  Llo-Mir-7  Loc-Mir-7-P2  Lpo-Mir-7  Mal-Mir-7-P2a  Mdo-Mir-7-P2  Mgi-Mir-7  Mml-Mir-7-P2  Mmr-Mir-7-P2  Mmu-Mir-7-P2  Mom-Mir-7  Mun-Mir-7-P2  Neu-Mir-7-P2  Npo-Mir-7  Oan-Mir-7-P2  Obi-Mir-7  Ocu-Mir-7-P2  Ofu-Mir-7  Ovu-Mir-7  Pab-Mir-7-P2  Pau-Mir-7  Pbv-Mir-7-P2  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pma-Mir-7-o2  Pmi-Mir-7  Pve-Mir-7  Rno-Mir-7-P2  Rph-Mir-7  Sha-Mir-7-P2  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spt-Mir-7-P2  Spu-Mir-7  Sro-Mir-7  Sto-Mir-7-P2  Tca-Mir-7  Tgu-Mir-7-P2  War-Mir-7  Xbo-Mir-7  Xtr-Mir-7-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1541: 118740-118803 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAUUGAUUCUUCCCCUGGCUGCUGCUGUGUGGAAGACUAGUGAUUUUGUUGUUUUUAGUUAGAUGAACCGACAACAAAUCACAGUCUGCCAAAUGGCACAGGCACCUCCUCUUCUGUCUCCCU
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Structure
        10           20        30        40        50        60  
GGAUUGAUUCUUCCCCU---|G   C      G   A     A       U      UUUAGUU 
                    G CUG UGCUGU UGG AGACU GUGAUUU GUUGUU       A
                    C GAC ACGGUA ACC UCUGA CACUAAA CAACAG       G
UCCCUCUGUCUUCUCCUCCA^G   -      A   G     -       -      CCAAGUA 
  120       110       100         90         80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-7-P2a_5p
mirBase accessionMIMAT0044123
Sequence 
0- UGGAAGACUAGUGAUUUUGUUGUU -24
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Star sequence

Gmo-Mir-7-P2a_3p*
mirBase accessionNone
Sequence 
42- CAACAAAUCACAGUCUGCCAAA -64
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