Mir-7-P7

MirGeneDB ID

Ebu-Mir-7-P7

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-7-P5 Ebu-Mir-7-P6 Ebu-Mir-7-P8

Orthologues

Aae-Mir-7 Aga-Mir-7 Agr-Mir-7 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Cin-Mir-7 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Esc-Mir-7 Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Isc-Mir-7 Lan-Mir-7 Lgi-Mir-7 Llo-Mir-7 Lpo-Mir-7 Mgi-Mir-7 Mom-Mir-7 Npo-Mir-7 Obi-Mir-7 Ofu-Mir-7 Ovu-Mir-7 Pau-Mir-7 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pmi-Mir-7 Pve-Mir-7 Rph-Mir-7 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spu-Mir-7 Sro-Mir-7 Tca-Mir-7 War-Mir-7 Xbo-Mir-7

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Bilateria

Genome context
(Eburgeri_3)

FYBX02010824.1: 244027-244083 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAGAGUGCAAAAUCUGAUCCCUGUCCGCGUGGAAGACUGGUGAUUUUGUUGUUGUGUUGGGAAACAACAGACCGCAGUCUUCCACUCGACCAUGUGUUCACUUUCUUCAUUCUUCG

Get precursor sequence

Structure

        10        20          30        40        50         
AAAGAGUGCAAAAUCUGAUCCC--| UC  C           G  AU         GUGU 
                        UG  CG GUGGAAGACUG UG  UUUGUUGUU    \
                        AC  GC CACCUUCUGAC GC  AGACAACAA    U
GCUUCUUACUUCUUUCACUUGUGU^ CA  U           -  C-         AGGG 
     110       100        90        80          70        60

Deep sequencing

3' NTU

Unknown

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Ebu-Mir-7-P7_5p (predicted)

mirBase accession

None

Sequence

0- UGGAAGACUGGUGAUUUUGUUGUU -24

Get sequence

Star sequence

Ebu-Mir-7-P7_3p* (predicted)

mirBase accession

None

Sequence

35- CAACAGACCGCAGUCUUCCACU -57

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