MirGeneDB 3.0

MirGeneDB ID

Tur-Mir-7-P28

Family name MIR-7 (all species)
Seed GGAAGAC
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID tur-mir-7
Paralogues Tur-Mir-7-P29 
Orthologues Aae-Mir-7  Aga-Mir-7  Agr-Mir-7  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Cin-Mir-7  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Esc-Mir-7  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Isc-Mir-7  Lan-Mir-7  Lgi-Mir-7  Llo-Mir-7  Lpo-Mir-7  Mgi-Mir-7  Mom-Mir-7  Npo-Mir-7  Obi-Mir-7  Ofu-Mir-7  Ovu-Mir-7  Pau-Mir-7  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pmi-Mir-7  Pve-Mir-7  Rph-Mir-7  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spu-Mir-7  Sro-Mir-7  Tca-Mir-7  War-Mir-7  Xbo-Mir-7 
Node of Origin (locus) T. urticae
Node of Origin (family) Bilateria
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)
HE587302.1: 1216514-1216576 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCACAAUUGCCACAAUUACCAAUCUCCUUGUGGAAGACUAGUGAUUUUGUUGUUUGUCUGUUAGUAAUUAAACAAGAAAUCGCUAGCUUCCGAUGGAGAAUUGGAAAUAAAUCAUCAAUCUAA
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Structure
        10         20         30        40        50        60  
UCACAAUUGCCACAAUUA-    -|    UUG      A           G     UGUCUGU 
                   CCAA UCUCC   UGGAAG CUAGUGAUUUU UUGUU       U
                   GGUU AGAGG   GCCUUC GAUCGCUAAAG AACAA       A
AAUCUAACUACUAAAUAAA    A^    UA-      -           -     AUUAAUG 
 120       110       100         90         80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
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Mature sequence

Tur-Mir-7-P28_5p

mirBase accessionMIMAT0023036
Sequence
0- UGGAAGACUAGUGAUUUUGUUGUU -24
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Star sequence

Tur-Mir-7-P28_3p*

mirBase accessionMIMAT0023037
Sequence
42- CAAGAAAUCGCUAGCUUCCGA -63
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