MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-9-P15

Family name MIR-9 (all species)
Seed UAAAGCU
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-79
Paralogues Cel-Mir-9-P14  Cel-Mir-9-P16 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cbr-Mir-9-P15  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Bilateria
Genome context
(ce11)		 chrI: 9332964-9333027 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P15)		 Mir-9-P15 chrI: 9332964-9333027 [+] UCSC Ensembl
Mir-2-o3 chrI: 9372783-9372846 [-] UCSC Ensembl
Mir-71 chrI: 9379947-9380005 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUAAGUUGAAAUUAGUAGACAUUCUCCGAUCUUUGGUGAUUCAGCUUCAAUGAUUGGCUACAGGUUUCUUUCAUAAAGCUAGGUUACCAAAGCUCGGCGUCUUGAUCUACAGUUCUUUUUUUUU
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Structure
        10              20        30        40        50        60  
GUAAGUUGAAAUUAGUA------|  AUUCU    U          UC     CA    UUGGCUAC 
                       GAC     CCGA CUUUGGUGAU  AGCUU  AUGA        \
                       CUG     GGCU GAAACCAUUG  UCGAA  UACU        A
UUUUUUUUUCUUGACAUCUAGUU^  C----    C          GA     A-    UUCUUUGG 
  120       110       100            90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-9-P15_5p*
mirBase accessionMIMAT0020322
Sequence 
0- CUUUGGUGAUUCAGCUUCAAUGA -23
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Mature sequence

Cel-Mir-9-P15_3p
mirBase accessionMIMAT0000051
Sequence 
42- AUAAAGCUAGGUUACCAAAGCU -64
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Proposed targets microrna.org: MIMAT0000051
TargetScanWorm: cel-miR-79