MirGeneDB 2.1
MirGeneDB ID

Cel-Mir-2-o3

Family name MIR-2 (all species)
Seed AUCACAG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-2
Paralogues Cel-Mir-2-o4  Cel-Mir-2-o5  Cel-Mir-2-P11 
Orthologues Aae-Mir-2-P3  Bge-Mir-2-P3  Cbr-Mir-2-o3  Csc-Mir-2-P3n  Csc-Mir-2-P3o  Dan-Mir-2-P3a-v1  Dan-Mir-2-P3a-v2  Dan-Mir-2-P3b  Dma-Mir-2-P3  Dme-Mir-2-P3a  Dme-Mir-2-P3b  Dmo-Mir-2-P3b  Dpu-Mir-2-P3  Dsi-Mir-2-P3a  Dsi-Mir-2-P3b  Dya-Mir-2-P3a  Dya-Mir-2-P3b  Hme-Mir-2-P3-v1  Hme-Mir-2-P3-v2  Isc-Mir-2-P3  Lpo-Mir-2-P3g  Lpo-Mir-2-P3h  Lpo-Mir-2-P3i  Lpo-Mir-2-P3k  Lpo-Mir-2-P3l  Lpo-Mir-2-P3m  Tca-Mir-2-P3-v1  Tca-Mir-2-P3-v2 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(ce11)		 chrI: 9372783-9372846 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o3)		 Mir-9-P15 chrI: 9332964-9333027 [+] UCSC Ensembl
Mir-2-o3 chrI: 9372783-9372846 [-] UCSC Ensembl
Mir-71 chrI: 9379947-9380005 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCGACGAAUCUAAACAGUAUACAGAAAGCCAUCAAAGCGGUGGUUGAUGUGUUGCAAAUUAUGACUUUCAUAUCACAGCCAGCUUUGAUGUGCUGCCUGUUGCACUGUAAUUUUUUAUAGCAA
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Structure
        10           20        30          40        50        60 
UUCGACGAAUCUAAACA---   U    AA   -         -|  GGU       UUGCAAAU 
                    GUA ACAG  AGC CAUCAAAGC GGU   UGAUGUG        \
                    CGU UGUC  UCG GUAGUUUCG CCG   ACUAUAC        U
AACGAUAUUUUUUAAUGUCA   -    CG   U         A^  AC-       UUUCAGUA 
  120       110        100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-2-o3_5p*
mirBase accessionMIMAT0020302
Sequence 
0- CAUCAAAGCGGUGGUUGAUGUG -22
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Mature sequence

Cel-Mir-2-o3_3p
mirBase accessionMIMAT0000004
Sequence 
41- UAUCACAGCCAGCUUUGAUGUGC -64
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Proposed targets microrna.org: MIMAT0000004
TargetScanWorm: cel-miR-2