MirGeneDB ID | Gpa-Mir-2-P3a |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
Gpa-Mir-2-P1-v1
Gpa-Mir-2-P1-v2
Gpa-Mir-2-P2a
Gpa-Mir-2-P2b
Gpa-Mir-2-P3b
Gpa-Mir-2-P4a-v1
Gpa-Mir-2-P4a-v2
Gpa-Mir-2-P4b-v1
Gpa-Mir-2-P4b-v2
Gpa-Mir-2-P5-v1
Gpa-Mir-2-P5-v2
Gpa-Mir-2-P6
Gpa-Mir-2-P7
Gpa-Mir-2-P8
Gpa-Mir-2-P9
|
Orthologues |
Aae-Mir-2-P3
Aga-Mir-2-P3
Bge-Mir-2-P3-v1
Bge-Mir-2-P3-v2
Cbr-Mir-2-o3
Cel-Mir-2-o3
Dan-Mir-2-P3a-v1
Dan-Mir-2-P3a-v2
Dlo-Mir-2-P3-v1
Dlo-Mir-2-P3-v2
Dma-Mir-2-P3
Dme-Mir-2-P3a
Dpu-Mir-2-P3
Dsi-Mir-2-P3a
Dya-Mir-2-P3a
Gsp-Mir-2
Hme-Mir-2-P3-v1
Hme-Mir-2-P3-v2
Isc-Mir-2-P3
Ple-Mir-2
Tca-Mir-2-P3-v1
Tca-Mir-2-P3-v2
|
Node of Origin (locus) |
Glossinidae + Drosophilidae
|
Node of Origin (family) |
Protostomia
|
Genome context (GpalI1) |
Scaffold73: 688954-689018 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAAAGUUCGUUACAAUUGAAAUUGUGUCCUUCUUCAGAGCUGUAGUGACAUGUAGUCUUUUUAAUAUUCAUAUCACAGCCAGCUUUGAGGAGCGAUACGGUUUUAAAUGAAAACAACUCUAAGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAAAAGUUCGUUACAAU-- C UA-| C UAGUCUU
UGAAAUUGUGUC UUCUUCAGAGCUG GUGA AUG U
AUUUUGGCAUAG GAGGAGUUUCGAC CACU UAC U
UGAAUCUCAACAAAAGUAA C CGA^ A UUAUAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Star sequence |
Gpa-Mir-2-P3a_5p* |
mirBase accession | None |
Sequence |
0- UUCUUCAGAGCUGUAGUGACAUG -23
Get sequence
|
Mature sequence |
Gpa-Mir-2-P3a_3p |
mirBase accession | None |
Sequence |
41- UAUCACAGCCAGCUUUGAGGAGCG -65
Get sequence
|