MirGeneDB ID | Gpa-Mir-2-P4b-v2 |
Family name |
MIR-2 (all species) |
Seed |
CACAGCC |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
|
Paralogues |
Gpa-Mir-2-P1-v1
Gpa-Mir-2-P1-v2
Gpa-Mir-2-P2a
Gpa-Mir-2-P2b
Gpa-Mir-2-P3a
Gpa-Mir-2-P3b
Gpa-Mir-2-P4a-v1
Gpa-Mir-2-P4a-v2
Gpa-Mir-2-P4b-v1
Gpa-Mir-2-P5-v1
Gpa-Mir-2-P5-v2
Gpa-Mir-2-P6
Gpa-Mir-2-P7
Gpa-Mir-2-P8
Gpa-Mir-2-P9
|
Orthologues |
Aae-Mir-2-P4-v1
Aae-Mir-2-P4-v2
Aga-Mir-2-P4-v1
Aga-Mir-2-P4-v2
Bge-Mir-2-P4-v1
Bge-Mir-2-P4-v2
Cbr-Mir-2-o4
Cel-Mir-2-o4
Dan-Mir-2-P4b-v1
Dan-Mir-2-P4b-v2
Dma-Mir-2-P4
Dme-Mir-2-P4b-v1
Dme-Mir-2-P4b-v2
Dmo-Mir-2-P4b-v1
Dmo-Mir-2-P4b-v2
Dpu-Mir-2-P4
Dsi-Mir-2-P4b-v1
Dsi-Mir-2-P4b-v2
Dya-Mir-2-P4b-v1
Dya-Mir-2-P4b-v2
Gsp-Mir-2
Hme-Mir-2-P4
Isc-Mir-2-P4
Ple-Mir-2
Tca-Mir-2-P4-v1
Tca-Mir-2-P4-v2
|
Node of Origin (locus) |
Glossinidae + Drosophilidae
|
Node of Origin (family) |
Protostomia
|
Genome context (GpalI1) |
Scaffold18: 2343308-2343367 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUAAAGAAAAAAAAUGUUGCUUAUCUAAGCCUCAUCAAGUGGUUGUGAUAUGGAUUAUCAACGCAUAUCACAGCCAGCUUUGAUGAGCUAGGAUAAUCAACGGGAAACAACAUAAAAUG
Get precursor sequence
|
Structure | 10 20 30 40 50
GCUAAAGAAAAAAAAUG-- C A C --| UGGAUUA
UUG UUAUCU AG CUCAUCAAG UGGUUGUGAUA \
AAC AAUAGG UC GAGUAGUUU ACCGACACUAU U
GUAAAAUACAACAAAGGGC U A - CG^ ACGCAAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Star sequence |
Gpa-Mir-2-P4b-v2_5p* |
mirBase accession | None |
Sequence |
0- CCUCAUCAAGUGGUUGUGAUA -21
Get sequence
|
Mature sequence |
Gpa-Mir-2-P4b-v2_3p |
mirBase accession | None |
Sequence |
38- UCACAGCCAGCUUUGAUGAGCU -60
Get sequence
|