Mir-2-P4

MirGeneDB ID

Isc-Mir-2-P4

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Deer tick (Ixodes scapularis)

MiRBase ID

isc-mir-2a

Paralogues

Isc-Mir-2-P1 Isc-Mir-2-P3

Orthologues

Aae-Mir-2-P4-v1 Aae-Mir-2-P4-v2 Aga-Mir-2-P4-v1 Aga-Mir-2-P4-v2 Bge-Mir-2-P4-v1 Bge-Mir-2-P4-v2 Cbr-Mir-2-o4 Cel-Mir-2-o4 Csc-Mir-2-P4n Csc-Mir-2-P4o Dan-Mir-2-P4a-v1 Dan-Mir-2-P4a-v2 Dan-Mir-2-P4b-v1 Dan-Mir-2-P4b-v2 Dma-Mir-2-P4 Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dpu-Mir-2-P4 Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Dya-Mir-2-P4b-v1 Dya-Mir-2-P4b-v2 Gpa-Mir-2-P4a-v1 Gpa-Mir-2-P4a-v2 Gpa-Mir-2-P4b-v1 Gpa-Mir-2-P4b-v2 Gsp-Mir-2 Hme-Mir-2-P4 Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l Ple-Mir-2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(GCF_016920785.2_ASM1692078v2_ISC)

NW_024609884.1: 3130738-3130797 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P4)

Mir-71 NW_024609884.1: 3130205-3130267 [+] Ensembl
Mir-2-P1 NW_024609884.1: 3130345-3130409 [+] Ensembl
Mir-2-P4 NW_024609884.1: 3130738-3130797 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GCCUGCAUUUCGUAGACGUCCCACCUCUGUUCGUCAAAGUGGCUCUGAUGUGUGUCUCUUUUUUUCAUAUCACAGCCAGCUUUGAUGAGCGGUGGUGAGUCUCCUACUUCGGAAUGAGGC

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Structure

        10        20          30         40        50         
GCCUGCAUUUCGUAGACGUCC--    U             -|    C       UGUCUC 
                       CACC CUGUUCGUCAAAG UGGCU UGAUGUG      \
                       GUGG GGCGAGUAGUUUC ACCGA ACUAUAC      U
CGGAGUAAGGCUUCAUCCUCUGA    U             G^    C       UUUUUU 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Sa	Sa	To

Star sequence

Isc-Mir-2-P4_5p*

mirBase accession

None

Sequence

0- UCGUCAAAGUGGCUCUGAUGUG -22

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Mature sequence

Isc-Mir-2-P4_3p

mirBase accession

MIMAT0012696

Sequence

37- UAUCACAGCCAGCUUUGAUGAGC -60

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