MirGeneDB ID | Csc-Mir-2-P4o |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Arizona bark scorpion (Centruroides sculpturatus) |
MiRBase ID |
|
Paralogues |
Csc-Mir-2-P1n
Csc-Mir-2-P1o
Csc-Mir-2-P2o
Csc-Mir-2-P3n
Csc-Mir-2-P3o
Csc-Mir-2-P4n
|
Orthologues |
Aae-Mir-2-P4-v1
Aae-Mir-2-P4-v2
Cbr-Mir-2-o4
Cel-Mir-2-o4
Dma-Mir-2-P4
Dpu-Mir-2-P4
Hme-Mir-2-P4
Isc-Mir-2-P4
Tca-Mir-2-P4-v1
Tca-Mir-2-P4-v2
|
Node of Origin (locus) |
C. sculpturatus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000671375.1_CSC) |
NW_019384652.1: 439497-439558 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAAGAAAACUGGAGAUAGCUGUGUUUCCACUCAUCAAAGUGGCUCUGAUGUGUUUUAUUAAUUUUCAUAUCACAGCCAGCUUUGAUGAGCGAAAACAUUGGCAGUUGUCAACUUUUUAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAAGAAAACUGGAGAUA- - CCA -| C UUUUAU
GCU GUGUUU CUCAUCAAAG UGGCU UGAUGUG \
CGG UACAAA GAGUAGUUUC ACCGA ACUAUAC U
AAAAUUUUUCAACUGUUGA U AGC G^ C UUUUAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Csc-Mir-2-P4o_5p* |
mirBase accession | None |
Sequence |
0- CUCAUCAAAGUGGCUCUGAUGUG -23
Get sequence
|
Mature sequence |
Csc-Mir-2-P4o_3p |
mirBase accession | None |
Sequence |
38- UAUCACAGCCAGCUUUGAUGAGCG -62
Get sequence
|