MirGeneDB 2.1

MirGeneDB ID

Hme-Mir-2-P4

Family name MIR-2 (all species)
Seed AUCACAG
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-2c
Paralogues Hme-Mir-2-P1-v1  Hme-Mir-2-P1-v2  Hme-Mir-2-P2c  Hme-Mir-2-P2d  Hme-Mir-2-P3-v1  Hme-Mir-2-P3-v2  Hme-Mir-2-P7  Hme-Mir-2-P8 
Orthologues Aae-Mir-2-P4-v1  Aae-Mir-2-P4-v2  Bge-Mir-2-P4c-v1  Bge-Mir-2-P4c-v2  Bge-Mir-2-P4d-v1  Bge-Mir-2-P4d-v2  Cbr-Mir-2-o4  Cel-Mir-2-o4  Csc-Mir-2-P4n  Csc-Mir-2-P4o  Dan-Mir-2-P4a-v1  Dan-Mir-2-P4a-v2  Dan-Mir-2-P4b-v1  Dan-Mir-2-P4b-v2  Dma-Mir-2-P4  Dme-Mir-2-P4a-v1  Dme-Mir-2-P4a-v2  Dme-Mir-2-P4b-v1  Dme-Mir-2-P4b-v2  Dmo-Mir-2-P4a-v1  Dmo-Mir-2-P4a-v2  Dmo-Mir-2-P4b-v1  Dmo-Mir-2-P4b-v2  Dpu-Mir-2-P4  Dsi-Mir-2-P4a-v1  Dsi-Mir-2-P4a-v2  Dsi-Mir-2-P4b-v1  Dsi-Mir-2-P4b-v2  Dya-Mir-2-P4a-v1  Dya-Mir-2-P4a-v2  Dya-Mir-2-P4b-v1  Dya-Mir-2-P4b-v2  Isc-Mir-2-P4  Lpo-Mir-2-P4h  Lpo-Mir-2-P4i  Lpo-Mir-2-P4j  Lpo-Mir-2-P4k  Lpo-Mir-2-P4l  Tca-Mir-2-P4-v1  Tca-Mir-2-P4-v2 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(Hmel_1)
HE671256: 345032-345089 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P4)
Mir-71 HE671256: 336024-336085 [+] Ensembl
Mir-2-P1-v2 HE671256: 344481-344540 [+] Ensembl
Mir-2-P1-v1 HE671256: 344483-344538 [+] Ensembl
Mir-2-P2c HE671256: 344637-344695 [+] Ensembl
Mir-2-P2d HE671256: 344775-344830 [+] Ensembl
Mir-2-P3-v2 HE671256: 344897-344955 [+] Ensembl
Mir-2-P3-v1 HE671256: 344898-344954 [+] Ensembl
Mir-2-P4 HE671256: 345032-345089 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUAGGAACUGUCGAAGAGCAAUUAGGGAGCCGACAAAGUGGUUGUGGAAUGUUCUAUAUCUGCAUAUCACAGCCAGCUUUGUUGACUUCAUUGUUGCCACUUAGCUGCAAAUUCCUG
Get precursor sequence
Structure
        10          20        30         40        50        
ACUAGGAACUGUCGAAGA--     UAG    C        -|        A   UUCUA 
                    GCAAU   GGAG CGACAAAG UGGUUGUGG AUG     \
                    CGUUG   CUUC GUUGUUUC ACCGACACU UAC     U
GUCCUUAAACGUCGAUUCAC     UUA    A        G^        A   GUCUA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-2-P4_5p*

mirBase accessionNone
Sequence
0- CCGACAAAGUGGUUGUGGAAUG -22
Get sequence
Mature sequence

Hme-Mir-2-P4_3p

mirBase accessionMIMAT0024973
Sequence
35- UAUCACAGCCAGCUUUGUUGACU -58
Get sequence