Mir-2-P4

MirGeneDB ID

Hme-Mir-2-P4

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Longwing butterfly (Heliconius melpomene)

MiRBase ID

hme-mir-2c

Paralogues

Hme-Mir-2-P1-v1 Hme-Mir-2-P1-v2 Hme-Mir-2-P2a Hme-Mir-2-P2b Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Hme-Mir-2-P7 Hme-Mir-2-P8

Orthologues

Aae-Mir-2-P4-v1 Aae-Mir-2-P4-v2 Aga-Mir-2-P4-v1 Aga-Mir-2-P4-v2 Bge-Mir-2-P4-v1 Bge-Mir-2-P4-v2 Cbr-Mir-2-o4 Cel-Mir-2-o4 Csc-Mir-2-P4n Csc-Mir-2-P4o Dan-Mir-2-P4a-v1 Dan-Mir-2-P4a-v2 Dan-Mir-2-P4b-v1 Dan-Mir-2-P4b-v2 Dma-Mir-2-P4 Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dpu-Mir-2-P4 Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Dya-Mir-2-P4b-v1 Dya-Mir-2-P4b-v2 Gpa-Mir-2-P4a-v1 Gpa-Mir-2-P4a-v2 Gpa-Mir-2-P4b-v1 Gpa-Mir-2-P4b-v2 Gsp-Mir-2 Isc-Mir-2-P4 Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l Ple-Mir-2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(Hmel_1)

HE671256: 345032-345089 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P4)

Mir-71 HE671256: 336024-336085 [+] Ensembl
Mir-2-P1-v2 HE671256: 344481-344540 [+] Ensembl
Mir-2-P1-v1 HE671256: 344483-344538 [+] Ensembl
Mir-2-P2a HE671256: 344637-344695 [+] Ensembl
Mir-2-P2b HE671256: 344775-344830 [+] Ensembl
Mir-2-P3-v2 HE671256: 344897-344955 [+] Ensembl
Mir-2-P3-v1 HE671256: 344898-344954 [+] Ensembl
Mir-2-P4 HE671256: 345032-345089 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

ACUAGGAACUGUCGAAGAGCAAUUAGGGAGCCGACAAAGUGGUUGUGGAAUGUUCUAUAUCUGCAUAUCACAGCCAGCUUUGUUGACUUCAUUGUUGCCACUUAGCUGCAAAUUCCUG

Get precursor sequence

Structure

        10          20        30         40        50        
ACUAGGAACUGUCGAAGA--     UAG    C        -|        A   UUCUA 
                    GCAAU   GGAG CGACAAAG UGGUUGUGG AUG     \
                    CGUUG   CUUC GUUGUUUC ACCGACACU UAC     U
GUCCUUAAACGUCGAUUCAC     UUA    A        G^        A   GUCUA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Fe	Fe	Fe	Fe	Ma	Ma

Star sequence

Hme-Mir-2-P4_5p*

mirBase accession

None

Sequence

0- CCGACAAAGUGGUUGUGGAAUG -22

Get sequence

Mature sequence

Hme-Mir-2-P4_3p

mirBase accession

MIMAT0024973

Sequence

35- UAUCACAGCCAGCUUUGUUGACU -58

Get sequence