Mir-2-P4-v2

MirGeneDB ID

Aga-Mir-2-P4-v2

Family name

MIR-2 (all species)

Seed

CACAGCC

Species

African malaria mosquito (Anopheles gambiae)

MiRBase ID

aga-mir-2-1

Paralogues

Aga-Mir-2-P1-v1 Aga-Mir-2-P1-v2 Aga-Mir-2-P2a Aga-Mir-2-P2b Aga-Mir-2-P3 Aga-Mir-2-P4-v1 Aga-Mir-2-P5a1 Aga-Mir-2-P5a2 Aga-Mir-2-P5b Aga-Mir-2-P7 Aga-Mir-2-P8

Orthologues

Aae-Mir-2-P4-v1 Aae-Mir-2-P4-v2 Bge-Mir-2-P4-v1 Bge-Mir-2-P4-v2 Cbr-Mir-2-o4 Cel-Mir-2-o4 Csc-Mir-2-P4n Csc-Mir-2-P4o Dan-Mir-2-P4a-v1 Dan-Mir-2-P4a-v2 Dan-Mir-2-P4b-v1 Dan-Mir-2-P4b-v2 Dma-Mir-2-P4 Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dpu-Mir-2-P4 Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Dya-Mir-2-P4b-v1 Dya-Mir-2-P4b-v2 Gpa-Mir-2-P4a-v1 Gpa-Mir-2-P4a-v2 Gpa-Mir-2-P4b-v1 Gpa-Mir-2-P4b-v2 Gsp-Mir-2 Hme-Mir-2-P4 Isc-Mir-2-P4 Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l Ple-Mir-2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)

NC_064601.1: 106556284-106556349 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P4-v2)

Mir-2-P4-v1 NC_064601.1: 106556282-106556351 [-] Ensembl
Mir-2-P4-v2 NC_064601.1: 106556284-106556349 [-] Ensembl
Mir-2-P3 NC_064601.1: 106556572-106556654 [-] Ensembl
Mir-2-P2b NC_064601.1: 106556743-106556806 [-] Ensembl
Mir-2-P2a NC_064601.1: 106557252-106557346 [-] Ensembl
Mir-2-P1-v1 NC_064601.1: 106557875-106557936 [-] Ensembl
Mir-2-P1-v2 NC_064601.1: 106557875-106557936 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCUCUCGGUACAAACGCAUGUCCUGUCUCUCAAAGUGGCUGUGAAAUGGUGCACUUUCGAUCCGAUAUCUCAUAUCACAGCCAGCUUUGAUGAGCUAGGCCGUGUGACGCUUUCGCCUAAAGGU

Get precursor sequence

Structure

        10          20        30          40        50        60 
UUUCUCUCGGUACAAAC--     U    U   -      -|        A  GGUGCACUUUC 
                   GCAUG CCUG CUC UCAAAG UGGCUGUGA AU           G
                   UGUGC GGAU GAG AGUUUC ACCGACACU UA           A
UGGAAAUCCGCUUUCGCAG     C    C   U      G^        A  CUCUAUAGCCU 
    120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr

Star sequence

Aga-Mir-2-P4-v2_5p*

mirBase accession

None

Sequence

0- CUCAAAGUGGCUGUGAAAUG -20

Get sequence

Mature sequence

Aga-Mir-2-P4-v2_3p

mirBase accession

MIMAT0009202

Sequence

46- UCACAGCCAGCUUUGAUGAG -66

Get sequence