Mir-2-P4i

MirGeneDB ID

Lpo-Mir-2-P4i

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-2-P1g Lpo-Mir-2-P1h Lpo-Mir-2-P1i Lpo-Mir-2-P1j Lpo-Mir-2-P1k Lpo-Mir-2-P1l Lpo-Mir-2-P1m Lpo-Mir-2-P2g Lpo-Mir-2-P2h Lpo-Mir-2-P2j Lpo-Mir-2-P2l Lpo-Mir-2-P2m Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Lpo-Mir-2-P4h Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l

Orthologues

Aae-Mir-2-P4-v1 Aae-Mir-2-P4-v2 Aga-Mir-2-P4-v1 Aga-Mir-2-P4-v2 Bge-Mir-2-P4-v1 Bge-Mir-2-P4-v2 Cbr-Mir-2-o4 Cel-Mir-2-o4 Dma-Mir-2-P4 Dpu-Mir-2-P4 Gsp-Mir-2 Hme-Mir-2-P4 Isc-Mir-2-P4 Ple-Mir-2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013665749.1: 433863-433924 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AUGGUUGCAUGUCAUCUUAGCCUGUCUUCGGUCGUCAGAGUGGUUGUGAUGUGUUUUCUGUCAAAUCAUAUCACAGCCAGCUUUGAUGAGCGGAGAUGUUGUGCUUAACUUCUUCAAUUUUA

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Structure

        10            20        30        40         50          
AUGGUUGCAUGUCAUCU----|   CU       G         -             UUUUCU 
                     UAGC  GUCUUCG UCGUCAGAG UGGUUGUGAUGUG      \
                     GUUG  UAGAGGC AGUAGUUUC ACCGACACUAUAC      G
AUUUUAACUUCUUCAAUUCGU^   --       G         G             UAAACU 
120       110       100          90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-2-P4i_5p*

mirBase accession

None

Sequence

0- GUCGUCAGAGUGGUUGUGAUGUG -23

Get sequence

Mature sequence

Lpo-Mir-2-P4i_3p

mirBase accession

None

Sequence

38- UAUCACAGCCAGCUUUGAUGAGCG -62

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