Mir-2-o4

MirGeneDB ID

Cbr-Mir-2-o4

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-43

Paralogues

Cbr-Mir-2-o3 Cbr-Mir-2-P11

Orthologues

Aae-Mir-2-P4-v1 Aae-Mir-2-P4-v2 Aga-Mir-2-P4-v1 Aga-Mir-2-P4-v2 Bge-Mir-2-P4-v1 Bge-Mir-2-P4-v2 Cel-Mir-2-o4 Csc-Mir-2-P4n Csc-Mir-2-P4o Dan-Mir-2-P4a-v1 Dan-Mir-2-P4a-v2 Dan-Mir-2-P4b-v1 Dan-Mir-2-P4b-v2 Dma-Mir-2-P4 Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dpu-Mir-2-P4 Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Dya-Mir-2-P4b-v1 Dya-Mir-2-P4b-v2 Gpa-Mir-2-P4a-v1 Gpa-Mir-2-P4a-v2 Gpa-Mir-2-P4b-v1 Gpa-Mir-2-P4b-v2 Gsp-Mir-2 Hme-Mir-2-P4 Isc-Mir-2-P4 Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l Ple-Mir-2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2

Node of Origin (locus)

Caenorhabditis

Node of Origin (family)

Protostomia

Genome context
(CB4)

II: 8891220-8891282 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-o4)

Mir-279-P10 II: 8891068-8891135 [-] Ensembl
Mir-2-o4 II: 8891220-8891282 [-] Ensembl
Mir-36-o25 II: 8891373-8891435 [-] Ensembl
Mir-279-P11a II: 8900359-8900424 [-] Ensembl
Mir-279-P11b II: 8903154-8903219 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AAACAUAAGAAAAGAGGCGAUUCUGCCCGUGACAUCAAGAUGCUUGUGAUUAUGCGAAAAUGUUGGGACAUAUCACAGUUUACUUGCUGUCGCAGGCGGAUUAUUGCUAUUGCUCAUUUUGUG

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Structure

        10        20          30        40         50        60 
AAACAUAAGAAAAGAGGCGAU--      C      U    AU-|  U     U   CGAAAA 
                       UCUGCC GUGACA CAAG   GCU GUGAU AUG      U
                       AGGCGG CGCUGU GUUC   UGA CACUA UAC      G
GUGUUUUACUCGUUAUCGUUAUU      A      C    AUU^  -     -   AGGGUU 
 120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Star sequence

Cbr-Mir-2-o4_5p*

mirBase accession

None

Sequence

0- GACAUCAAGAUGCUUGUGAUUAUG -24

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Mature sequence

Cbr-Mir-2-o4_3p

mirBase accession

MIMAT0000468

Sequence

40- UAUCACAGUUUACUUGCUGUCGC -63

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