MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-2-o3

Family name MIR-2 (all species)
Seed AUCACAG
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-2
Paralogues Cbr-Mir-2-o4  Cbr-Mir-2-P11 
Orthologues Aae-Mir-2-P3  Aga-Mir-2-P3  Bge-Mir-2-P3-v1  Bge-Mir-2-P3-v2  Cel-Mir-2-o3  Csc-Mir-2-P3n  Csc-Mir-2-P3o  Dan-Mir-2-P3a-v1  Dan-Mir-2-P3a-v2  Dan-Mir-2-P3b  Dlo-Mir-2-P3-v1  Dlo-Mir-2-P3-v2  Dma-Mir-2-P3  Dme-Mir-2-P3a  Dme-Mir-2-P3b  Dmo-Mir-2-P3b  Dpu-Mir-2-P3  Dsi-Mir-2-P3a  Dsi-Mir-2-P3b  Dya-Mir-2-P3a  Dya-Mir-2-P3b  Gpa-Mir-2-P3a  Gpa-Mir-2-P3b  Gsp-Mir-2  Hme-Mir-2-P3-v1  Hme-Mir-2-P3-v2  Isc-Mir-2-P3  Lpo-Mir-2-P3g  Lpo-Mir-2-P3h  Lpo-Mir-2-P3i  Lpo-Mir-2-P3k  Lpo-Mir-2-P3l  Lpo-Mir-2-P3m  Ple-Mir-2  Tca-Mir-2-P3-v1  Tca-Mir-2-P3-v2 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(CB4)		 I: 2714104-2714186 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o3)		 Mir-2-o3 I: 2714104-2714186 [-] Ensembl
Mir-71 I: 2725619-2725677 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUCAUAUUCCUAUCCAUCUACAGAGAAAGCCCGUCAAAGUGGUGUGUGUUAUGCCGCAUAAGUGAACUUCUUUUCGGAAGUUUUGGUUCAUAUCACAGCCAGCUUUGAUGUGCUGUCUUGUAUAGAAUUUUUUGACAGGUUUG
Get precursor sequence
Structure
        10         20         30         40        50        60        70 
CUCAUAUUCCUAUCCAU-   CA-    A   C        -|   G    U    CCGCAUAAGUGAACUUC 
                  CUA   GAGA AGC CGUCAAAG UGGU UGUG UAUG                 \
                  GAU   UUCU UCG GUAGUUUC ACCG ACAC AUAC                 U
GUUUGGACAGUUUUUUAA   AUG    G   U        G^   -    U    UUGGUUUUGAAGGCUUU 
 140       130       120       110       100         90        80
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Mir-2-o3_5p*
mirBase accessionNone
Sequence 
0- CCGUCAAAGUGGUGUGUGUUAUG -23
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Mature sequence

Cbr-Mir-2-o3_3p
mirBase accessionMIMAT0029606
Sequence 
60- UAUCACAGCCAGCUUUGAUGUGC -83
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