Mir-2-P3

MirGeneDB ID

Dpu-Mir-2-P3

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Common water flea (Daphnia pulex)

MiRBase ID

dpu-mir-2-1

Paralogues

Dpu-Mir-2-o1 Dpu-Mir-2-o2 Dpu-Mir-2-P1 Dpu-Mir-2-P2 Dpu-Mir-2-P4

Orthologues

Aae-Mir-2-P3 Bge-Mir-2-P3 Cbr-Mir-2-o3 Cel-Mir-2-o3 Csc-Mir-2-P3n Csc-Mir-2-P3o Dan-Mir-2-P3a-v1 Dan-Mir-2-P3a-v2 Dan-Mir-2-P3b Dma-Mir-2-P3 Dme-Mir-2-P3a Dme-Mir-2-P3b Dmo-Mir-2-P3b Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dya-Mir-2-P3a Dya-Mir-2-P3b Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Isc-Mir-2-P3 Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(Daphnia_pulex.V1.0)

DAPPUscaffold_80: 240864-240934 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P3)

Mir-71 DAPPUscaffold_80: 240430-240495 [+] Ensembl
Mir-2-P3 DAPPUscaffold_80: 240864-240934 [+] Ensembl
Mir-2-P4 DAPPUscaffold_80: 241044-241106 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AUCGAGUUUGGUUUUCGCUACUACGUGCCGCUCGCAAAGUGGCUGUCAUGUGUCCCAAUUUCAAGUUUAGCGUUUCAUAUCACAGCCAGCUUUGAUGAGCGGGACGUUUUGUGGCCUUGCUCCCCCCUCGG

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Structure

        10        20          30          40        50        60    
AUCGAGUUUGGUUUUCGC   U--    G       -     -|      C     UCCCAAUUUCA 
                  UAC   ACGU CCGCUCG CAAAG UGGCUGU AUGUG           \
                  GUG   UGCA GGCGAGU GUUUC ACCGACA UAUAC           A
GGCUCCCCCCUCGUUCCG   UUU    G       A     G^      C     UUUGCGAUUUG 
 .       120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Star sequence

Dpu-Mir-2-P3_5p*

mirBase accession

None

Sequence

0- CUCGCAAAGUGGCUGUCAUGUG -22

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Mature sequence

Dpu-Mir-2-P3_3p

mirBase accession

MIMAT0012657

Sequence

47- UAUCACAGCCAGCUUUGAUGAGCG -71

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