MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-2-P2

Family name MIR-2 (all species)
Seed AUCACAG
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues Dpu-Mir-2-o2  Dpu-Mir-2-P1  Dpu-Mir-2-P3  Dpu-Mir-2-P4  Dpu-Mir-2-P5 
Orthologues Aae-Mir-2-P2b  Aga-Mir-2-P2a  Aga-Mir-2-P2b  Bge-Mir-2-P2a  Bge-Mir-2-P2b  Csc-Mir-2-P2n  Csc-Mir-2-P2o  Dan-Mir-2-P2a  Dan-Mir-2-P2b1  Dan-Mir-2-P2b2  Dlo-Mir-2-P2a  Dlo-Mir-2-P2b  Dma-Mir-2-o2  Dma-Mir-2-P2  Dme-Mir-2-P2a  Dme-Mir-2-P2b1  Dme-Mir-2-P2b2  Dmo-Mir-2-P2a  Dmo-Mir-2-P2b1  Dmo-Mir-2-P2b2  Dsi-Mir-2-P2a  Dsi-Mir-2-P2b1  Dsi-Mir-2-P2b2  Dya-Mir-2-P2a  Dya-Mir-2-P2b1  Dya-Mir-2-P2b2  Gpa-Mir-2-P2a  Gpa-Mir-2-P2b  Gsp-Mir-2  Hme-Mir-2-P2a  Hme-Mir-2-P2b  Lpo-Mir-2-P2g  Lpo-Mir-2-P2h  Lpo-Mir-2-P2j  Lpo-Mir-2-P2l  Lpo-Mir-2-P2m  Ple-Mir-2  Tca-Mir-2-P2a  Tca-Mir-2-P2b 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_80: 240731-240792 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P2)		 Mir-71 DAPPUscaffold_80: 240430-240495 [+] Ensembl
Mir-2-P3 DAPPUscaffold_80: 240864-240934 [+] Ensembl
Mir-2-P4 DAPPUscaffold_80: 241044-241106 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAAAGACAUUUGACGCAUUUGCGCCGCUCGUCGGAAAGGCUGUGGUGUGUUGCCAUUUUACAAUUUCAUAUCACAGCCAUUCUAGAUGCGCGGAGCUGCCGGAAGACGCAGAGAAAUUGA
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Structure
        10        20          30         40        50          
AAAAAAGACAUUUGACGCAUUU--  G    U    -|   A            UUGCCAUU 
                        GC CCGC CGUC GGAA GGCUGUGGUGUG        \
                        CG GGCG GUAG UCUU CCGACACUAUAC        U
AGUUAAAGAGACGCAGAAGGCCGU  A    C    A^   A            UUUAACAU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Dpu-Mir-2-P2_5p*
mirBase accessionNone
Sequence 
0- CGUCGGAAAGGCUGUGGUGUG -21
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Mature sequence

Dpu-Mir-2-P2_3p
mirBase accessionNone
Sequence 
40- UAUCACAGCCAUUCUAGAUGCG -62
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