Mir-2-P2b2

MirGeneDB ID

Dsi-Mir-2-P2b2

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-13b-2

Paralogues

Dsi-Mir-2-P1-v1 Dsi-Mir-2-P1-v2 Dsi-Mir-2-P2a Dsi-Mir-2-P2b1 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dsi-Mir-2-P5 Dsi-Mir-2-P6a Dsi-Mir-2-P6b Dsi-Mir-2-P6c Dsi-Mir-2-P7 Dsi-Mir-2-P8 Dsi-Mir-2-P9-v1 Dsi-Mir-2-P9-v2

Orthologues

Aae-Mir-2-P2b Aga-Mir-2-P2b Bge-Mir-2-P2b Dan-Mir-2-P2b2 Dlo-Mir-2-P2b Dma-Mir-2-o2 Dma-Mir-2-P2 Dme-Mir-2-P2b2 Dmo-Mir-2-P2b2 Dpu-Mir-2-o2 Dpu-Mir-2-P2 Dya-Mir-2-P2b2 Gpa-Mir-2-P2b Gsp-Mir-2 Hme-Mir-2-P2b Ple-Mir-2 Tca-Mir-2-P2b

Node of Origin (locus)

Drosophila

Node of Origin (family)

Protostomia

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

X: 8520310-8520370 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCCAUCGUCUGCCUCUGCUGUCUAUCAACGCGUCAAAAUGACUGUGAGCUAUGUGGAUUUGACUUCAUAUCACAGCCAUUUUGACGAGUUUGUUGGGCAGCCAGCCUCAUCAACGUGAAA

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Structure

        10          20         30        40        50        60
ACCCAUCGUCUGCCUCU--        U -|  G          A      GC    UGGAU 
                   GCUGUCUA C AAC CGUCAAAAUG CUGUGA  UAUG     U
                   CGACGGGU G UUG GCAGUUUUAC GACACU  AUAC     U
AAAGUGCAACUACUCCGAC        U U^  A          C      --    UUCAG 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

He	Wh

Star sequence

Dsi-Mir-2-P2b2_5p*

mirBase accession

None

Sequence

0- GCGUCAAAAUGACUGUGAGCUAUG -24

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Mature sequence

Dsi-Mir-2-P2b2_3p

mirBase accession

MIMAT0008845

Sequence

38- UAUCACAGCCAUUUUGACGAGUU -61

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