Mir-2-P2a

MirGeneDB ID

Dsi-Mir-2-P2a

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-13a

Paralogues

Dsi-Mir-2-P1-v1 Dsi-Mir-2-P1-v2 Dsi-Mir-2-P2b1 Dsi-Mir-2-P2b2 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dsi-Mir-2-P5 Dsi-Mir-2-P6a Dsi-Mir-2-P6b Dsi-Mir-2-P6c Dsi-Mir-2-P7 Dsi-Mir-2-P8 Dsi-Mir-2-P9-v1 Dsi-Mir-2-P9-v2

Orthologues

Aga-Mir-2-P2a Bge-Mir-2-P2a Dan-Mir-2-P2a Dlo-Mir-2-P2a Dma-Mir-2-o2 Dma-Mir-2-P2 Dme-Mir-2-P2a Dmo-Mir-2-P2a Dpu-Mir-2-o2 Dpu-Mir-2-P2 Dya-Mir-2-P2a Gpa-Mir-2-P2a Gsp-Mir-2 Hme-Mir-2-P2a Ple-Mir-2 Tca-Mir-2-P2a

Node of Origin (locus)

Neoptera

Node of Origin (family)

Protostomia

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

3R: 9985528-9985590 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P2a)

Mir-2-P1-v1 3R: 9985314-9985380 [+] UCSC Ensembl
Mir-2-P1-v2 3R: 9985314-9985380 [+] UCSC Ensembl
Mir-2-P2a 3R: 9985528-9985590 [+] UCSC Ensembl
Mir-2-P2b1 3R: 9985663-9985722 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCGUGAUCCAAGCCAUAGUUCUUACGUAACUCCUCAAAGGGUUGUGAAAUGUCGACUAUUAUCUACUCAUAUCACAGCCAUUUUGAUGAGUUUCGUGCGAAUCUCGGCAGCGGAUCGAAAAA

Get precursor sequence

Structure

        10          20        30        40         50        60
UUCGUGAUCCAAGCCAUA--    U    U     C      -|       A   UCGACUA 
                    GUUC UACG AACUC UCAAAG GGUUGUGA AUG       U
                    UAAG GUGC UUGAG AGUUUU CCGACACU UAC       U
AAAAAGCUAGGCGACGGCUC    C    U     U      A^       A   UCAUCUA 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Wh

Star sequence

Dsi-Mir-2-P2a_5p*

mirBase accession

None

Sequence

0- CUCCUCAAAGGGUUGUGAAAUG -22

Get sequence

Mature sequence

Dsi-Mir-2-P2a_3p

mirBase accession

MIMAT0008881

Sequence

40- UAUCACAGCCAUUUUGAUGAGUU -63

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