Mir-2-P8

MirGeneDB ID

Dsi-Mir-2-P8

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-308

Paralogues

Dsi-Mir-2-P1-v1 Dsi-Mir-2-P1-v2 Dsi-Mir-2-P2a Dsi-Mir-2-P2b1 Dsi-Mir-2-P2b2 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dsi-Mir-2-P5 Dsi-Mir-2-P6a Dsi-Mir-2-P6b Dsi-Mir-2-P6c Dsi-Mir-2-P7 Dsi-Mir-2-P9-v1 Dsi-Mir-2-P9-v2

Orthologues

Aae-Mir-2-P8 Aga-Mir-2-P8 Asu-Mir-2-o8 Dan-Mir-2-P8 Dme-Mir-2-P8-v1 Dme-Mir-2-P8-v2 Dmo-Mir-2-P8 Dya-Mir-2-P8 Gpa-Mir-2-P8 Gsp-Mir-2 Hme-Mir-2-P8 Ple-Mir-2 Tca-Mir-2-P8

Node of Origin (locus)

Aparaglossata

Node of Origin (family)

Protostomia

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

2R: 10806835-10806895 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P8)

Mir-2584 2R: 10767146-10767208 [+] UCSC Ensembl
Mir-2-P8 2R: 10806835-10806895 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGUGGGGGGAAUCACACGUCUCGACGCCUCGCAGUAUAUUUUUGUGUUUUGUUUCGUUUUGCAACUCAAAUCACAGGAUUAUACUGUGAGAUGACCAGCGUGCCAGCAGCAGAAAGCGAA

Get precursor sequence

Structure

        10        20               30        40        50          
UGGUGGGGGGAAUCACACGUCUCG    -------|          U       U    UUUCGUU 
                        ACGC       CUCGCAGUAUA UUUUGUG UUUG       \
                        UGCG       GAGUGUCAUAU AGGACAC AAAC       U
AAGCGAAAGACGACGACCG-----    ACCAGUA^          U       U    UCAACGU 
 .       110            100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Wh

Star sequence

Dsi-Mir-2-P8_5p*

mirBase accession

None

Sequence

0- CGCAGUAUAUUUUUGUGUUUUG -22

Get sequence

Mature sequence

Dsi-Mir-2-P8_3p

mirBase accession

MIMAT0008877

Sequence

39- AAUCACAGGAUUAUACUGUGAG -61

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