Mir-2-P6a

MirGeneDB ID

Dsi-Mir-2-P6a

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-6-1

Paralogues

Dsi-Mir-2-P1-v1 Dsi-Mir-2-P1-v2 Dsi-Mir-2-P2a Dsi-Mir-2-P2b1 Dsi-Mir-2-P2b2 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dsi-Mir-2-P5 Dsi-Mir-2-P6b Dsi-Mir-2-P6c Dsi-Mir-2-P7 Dsi-Mir-2-P8 Dsi-Mir-2-P9-v1 Dsi-Mir-2-P9-v2

Orthologues

Asu-Mir-2-o6 Dan-Mir-2-P6a Dme-Mir-2-P6a Dmo-Mir-2-P6a Dya-Mir-2-P6a

Node of Origin (locus)

Drosophila

Node of Origin (family)

Protostomia

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

2R: 16150863-16150925 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P6a)

Mir-2-P6c 2R: 16150571-16150636 [-] UCSC Ensembl
Mir-2-P6b 2R: 16150723-16150784 [-] UCSC Ensembl
Mir-2-P6a 2R: 16150863-16150925 [-] UCSC Ensembl
Mir-2-P5 2R: 16151011-16151070 [-] UCSC Ensembl
Mir-9-P9 2R: 16151148-16151204 [-] UCSC Ensembl
Mir-279-P2 2R: 16151283-16151358 [-] UCSC Ensembl
Mir-3-P1 2R: 16151447-16151503 [-] UCSC Ensembl
Mir-3-P2 2R: 16151557-16151615 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UACUAAACUUAAUCACAGCCUUUAAAGUAGAGGGAAUAGUUGCUGUGCUGUAAGUUUAUAUACCGUAUCUAUAUCACAGUGGCUGUUCUUUUUGUACCUAAAGGCAUUUUACAUCAUUAUUUA

Get precursor sequence

Structure

        10         20         30        40        50        60 
UACUAAACUUAAUCACA-       AAG-|            UG     C    AGUUUAUA 
                  GCCUUUA    UAGAGGGAAUAGU  CUGUG UGUA        \
                  CGGAAAU    GUUUUUCUUGUCG  GACAC AUAU        U
AUUUAUUACUACAUUUUA       CCAU^            GU     U    CUAUGCCA 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

He	Wh

Star sequence

Dsi-Mir-2-P6a_5p*

mirBase accession

None

Sequence

0- AGGGAAUAGUUGCUGUGCUGUA -22

Get sequence

Mature sequence

Dsi-Mir-2-P6a_3p

mirBase accession

MIMAT0008885

Sequence

41- UAUCACAGUGGCUGUUCUUUUU -63

Get sequence