MirGeneDB 3.0

MirGeneDB ID

Dsi-Mir-2-P6a

Family name MIR-2 (all species)
Seed AUCACAG
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-6-1
Paralogues Dsi-Mir-2-P1-v1  Dsi-Mir-2-P1-v2  Dsi-Mir-2-P2a  Dsi-Mir-2-P2b1  Dsi-Mir-2-P2b2  Dsi-Mir-2-P3a  Dsi-Mir-2-P3b  Dsi-Mir-2-P4a-v1  Dsi-Mir-2-P4a-v2  Dsi-Mir-2-P4b-v1  Dsi-Mir-2-P4b-v2  Dsi-Mir-2-P5  Dsi-Mir-2-P6b  Dsi-Mir-2-P6c  Dsi-Mir-2-P7  Dsi-Mir-2-P8  Dsi-Mir-2-P9-v1  Dsi-Mir-2-P9-v2 
Orthologues Asu-Mir-2-o6  Dan-Mir-2-P6a  Dme-Mir-2-P6a  Dmo-Mir-2-P6a  Dya-Mir-2-P6a  Gpa-Mir-2-P6  Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) Drosophila
Node of Origin (family) Protostomia
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)
2R: 16150863-16150925 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P6a)
Mir-2-P6c 2R: 16150571-16150636 [-] UCSC Ensembl
Mir-2-P6b 2R: 16150723-16150784 [-] UCSC Ensembl
Mir-2-P6a 2R: 16150863-16150925 [-] UCSC Ensembl
Mir-2-P5 2R: 16151011-16151070 [-] UCSC Ensembl
Mir-9-P9 2R: 16151148-16151204 [-] UCSC Ensembl
Mir-279-P1 2R: 16151283-16151358 [-] UCSC Ensembl
Mir-3-P2 2R: 16151447-16151503 [-] UCSC Ensembl
Mir-3-P1 2R: 16151557-16151615 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACUAAACUUAAUCACAGCCUUUAAAGUAGAGGGAAUAGUUGCUGUGCUGUAAGUUUAUAUACCGUAUCUAUAUCACAGUGGCUGUUCUUUUUGUACCUAAAGGCAUUUUACAUCAUUAUUUA
Get precursor sequence
Structure
        10         20         30        40        50        60 
UACUAAACUUAAUCACA-       AAG-|            UG     C    AGUUUAUA 
                  GCCUUUA    UAGAGGGAAUAGU  CUGUG UGUA        \
                  CGGAAAU    GUUUUUCUUGUCG  GACAC AUAU        U
AUUUAUUACUACAUUUUA       CCAU^            GU     U    CUAUGCCA 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
He Wh
Star sequence

Dsi-Mir-2-P6a_5p*

mirBase accessionNone
Sequence
0- AGGGAAUAGUUGCUGUGCUGUA -22
Get sequence
Mature sequence

Dsi-Mir-2-P6a_3p

mirBase accessionMIMAT0008885
Sequence
41- UAUCACAGUGGCUGUUCUUUUU -63
Get sequence