MirGeneDB 3.0

MirGeneDB ID

Dya-Mir-2-P6a

Family name MIR-2 (all species)
Seed AUCACAG
Species Fruit fly (Drosophila yakuba)
MiRBase ID dya-mir-6-1
Paralogues Dya-Mir-2-P1-v1  Dya-Mir-2-P1-v2  Dya-Mir-2-P2a  Dya-Mir-2-P2b1  Dya-Mir-2-P2b2  Dya-Mir-2-P3a  Dya-Mir-2-P3b  Dya-Mir-2-P4a-v1  Dya-Mir-2-P4a-v2  Dya-Mir-2-P4b-v1  Dya-Mir-2-P4b-v2  Dya-Mir-2-P5  Dya-Mir-2-P6b  Dya-Mir-2-P6c  Dya-Mir-2-P7  Dya-Mir-2-P8  Dya-Mir-2-P9-v1  Dya-Mir-2-P9-v2 
Orthologues Asu-Mir-2-o6  Dan-Mir-2-P6a  Dme-Mir-2-P6a  Dmo-Mir-2-P6a  Dsi-Mir-2-P6a  Gpa-Mir-2-P6  Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) Drosophila
Node of Origin (family) Protostomia
Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)
2R: 13624211-13624273 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P6a)
Mir-3-P1 2R: 13623513-13623571 [+] UCSC Ensembl
Mir-3-P2 2R: 13623628-13623684 [+] UCSC Ensembl
Mir-279-P1 2R: 13623775-13623848 [+] UCSC Ensembl
Mir-9-P9 2R: 13623927-13623983 [+] UCSC Ensembl
Mir-2-P5 2R: 13624064-13624124 [+] UCSC Ensembl
Mir-2-P6a 2R: 13624211-13624273 [+] UCSC Ensembl
Mir-2-P6b 2R: 13624349-13624410 [+] UCSC Ensembl
Mir-2-P6c 2R: 13624497-13624562 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACUAAGUUUAAUCACAGCCUUUAACGUAGAGGGAAUAGUUGCUGUGCUGUAAGUUAAUAACAAAUAUCUAUAUCACAGUGGCUGUUCUUUUUGUACCUAAAGUGCCUAACAUCAUUAAUAAU
Get precursor sequence
Structure
        10         20         30        40        50        60 
CACUAAGUUUAAUCACAGC-     ACG-|            UG     C    AGUUAAUA 
                    CUUUA    UAGAGGGAAUAGU  CUGUG UGUA        \
                    GAAAU    GUUUUUCUUGUCG  GACAC AUAU        A
UAAUAAUUACUACAAUCCGU     CCAU^            GU     U    CUAUAAAC 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Wh
Star sequence

Dya-Mir-2-P6a_5p*

mirBase accessionNone
Sequence
0- AGGGAAUAGUUGCUGUGCUGUA -22
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Mature sequence

Dya-Mir-2-P6a_3p

mirBase accessionMIMAT0009078
Sequence
41- UAUCACAGUGGCUGUUCUUUUU -63
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