Mir-2-P2b1

MirGeneDB ID

Dya-Mir-2-P2b1

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Fruit fly (Drosophila yakuba)

MiRBase ID

dya-mir-13b-1

Paralogues

Dya-Mir-2-P1-v1 Dya-Mir-2-P1-v2 Dya-Mir-2-P2a Dya-Mir-2-P2b2 Dya-Mir-2-P3a Dya-Mir-2-P3b Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Dya-Mir-2-P4b-v1 Dya-Mir-2-P4b-v2 Dya-Mir-2-P5 Dya-Mir-2-P6a Dya-Mir-2-P6b Dya-Mir-2-P6c Dya-Mir-2-P7 Dya-Mir-2-P8 Dya-Mir-2-P9-v1 Dya-Mir-2-P9-v2

Orthologues

Aae-Mir-2-P2b Aga-Mir-2-P2b Bge-Mir-2-P2b Dan-Mir-2-P2b1 Dlo-Mir-2-P2b Dma-Mir-2-o2 Dma-Mir-2-P2 Dme-Mir-2-P2b1 Dmo-Mir-2-P2b1 Dpu-Mir-2-o2 Dpu-Mir-2-P2 Dsi-Mir-2-P2b1 Gpa-Mir-2-P2b Gsp-Mir-2 Hme-Mir-2-P2b Ple-Mir-2 Tca-Mir-2-P2b

Node of Origin (locus)

Drosophila

Node of Origin (family)

Protostomia

Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)

3R: 15188742-15188801 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P2b1)

Mir-2-P1-v1 3R: 15188380-15188446 [+] UCSC Ensembl
Mir-2-P1-v2 3R: 15188380-15188446 [+] UCSC Ensembl
Mir-2-P2a 3R: 15188599-15188661 [+] UCSC Ensembl
Mir-2-P2b1 3R: 15188742-15188801 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCGAUUGACCCACGUCUUUCUUAUACCAUGUCGUUAAAAUGUUUGUGAACUUAUGUAUUCGCAAUCAUAUCACAGCCAUUUUGACGAGUUUGGGUAAAGAAAUCUCAACAAUUUCGGAAA

Get precursor sequence

Structure

        10          20        30          40        50        60
UCGAUUGACCCACGUCU--     A    AUG--|          U      ACU    UAUU 
                   UUCUU UACC     UCGUUAAAAUG UUGUGA   UAUG    C
                   AAGAA AUGG     AGCAGUUUUAC GACACU   AUAC    G
AAAGGCUUUAACAACUCUA     -    GUUUG^          C      ---    UAAC 
.       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Wh

Star sequence

Dya-Mir-2-P2b1_5p*

mirBase accession

None

Sequence

0- UCGUUAAAAUGUUUGUGAACUUAUG -25

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Mature sequence

Dya-Mir-2-P2b1_3p

mirBase accession

MIMAT0009056

Sequence

37- UAUCACAGCCAUUUUGACGAGUU -60

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