Mir-2-P2b

MirGeneDB ID

Hme-Mir-2-P2b

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Longwing butterfly (Heliconius melpomene)

MiRBase ID

hme-mir-13b

Paralogues

Hme-Mir-2-P1-v1 Hme-Mir-2-P1-v2 Hme-Mir-2-P2a Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Hme-Mir-2-P4 Hme-Mir-2-P7 Hme-Mir-2-P8

Orthologues

Aae-Mir-2-P2b Aga-Mir-2-P2b Bge-Mir-2-P2b Dan-Mir-2-P2b1 Dan-Mir-2-P2b2 Dlo-Mir-2-P2b Dma-Mir-2-o2 Dma-Mir-2-P2 Dme-Mir-2-P2b1 Dme-Mir-2-P2b2 Dmo-Mir-2-P2b1 Dmo-Mir-2-P2b2 Dpu-Mir-2-o2 Dpu-Mir-2-P2 Dsi-Mir-2-P2b1 Dsi-Mir-2-P2b2 Dya-Mir-2-P2b1 Dya-Mir-2-P2b2 Gpa-Mir-2-P2b Gsp-Mir-2 Ple-Mir-2 Tca-Mir-2-P2b

Node of Origin (locus)

Neoptera

Node of Origin (family)

Protostomia

Genome context
(Hmel_1)

HE671256: 344775-344830 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P2b)

Mir-71 HE671256: 336024-336085 [+] Ensembl
Mir-2-P1-v2 HE671256: 344481-344540 [+] Ensembl
Mir-2-P1-v1 HE671256: 344483-344538 [+] Ensembl
Mir-2-P2a HE671256: 344637-344695 [+] Ensembl
Mir-2-P2b HE671256: 344775-344830 [+] Ensembl
Mir-2-P3-v2 HE671256: 344897-344955 [+] Ensembl
Mir-2-P3-v1 HE671256: 344898-344954 [+] Ensembl
Mir-2-P4 HE671256: 345032-345089 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AUAUAGGUAUUUGGAGAGUCUGUGGCCCAUUCGUAAAAAUGGCUGUGCCAUGGUACAUAUUCAUAUCACAGCCAUUUUUGACGAGUUGGGCUGCGGGGCAGUUCUCUGGCAUCUUA

Get precursor sequence

Structure

        10         20         30         40        50       
AUAUAGGUAUUUGGAGAG-    UG    -     -|             CC   GUAC 
                   UCUG  GCCC AUUCG UAAAAAUGGCUGUG  AUG    \
                   GGGC  CGGG UGAGC GUUUUUACCGACAC  UAC    A
AUUCUACGGUCUCUUGACG    GU    U     A^             UA   UUAU 
    110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Fe	Fe	Fe	Fe	Ma	Ma

Star sequence

Hme-Mir-2-P2b_5p*

mirBase accession

None

Sequence

0- UCGUAAAAAUGGCUGUGCCAUG -22

Get sequence

Mature sequence

Hme-Mir-2-P2b_3p

mirBase accession

MIMAT0024941

Sequence

33- UAUCACAGCCAUUUUUGACGAGU -56

Get sequence