MirGeneDB 3.0
MirGeneDB ID

Hme-Mir-71

Family name MIR-71 (all species)
Seed CUCACUA
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-71
Paralogues
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Ava-Mir-71-P20  Ava-Mir-71-P21  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Egr-Mir-71  Esc-Mir-71  Gsa-Mir-71-o7  Gsa-Mir-71-o8  Hru-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pcr-Mir-71-v1  Pcr-Mir-71-v2  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sma-Mir-71-o5  Sma-Mir-71-o6  Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o2  Sme-Mir-71-o3  Sme-Mir-71-o4  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  Tur-Mir-71-P6a  Tur-Mir-71-P6b  War-Mir-71 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Hmel_1)		 HE671256: 336024-336085 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-71)		 Mir-71 HE671256: 336024-336085 [+] Ensembl
Mir-2-P1-v2 HE671256: 344481-344540 [+] Ensembl
Mir-2-P1-v1 HE671256: 344483-344538 [+] Ensembl
Mir-2-P2a HE671256: 344637-344695 [+] Ensembl
Mir-2-P2b HE671256: 344775-344830 [+] Ensembl
Mir-2-P3-v2 HE671256: 344897-344955 [+] Ensembl
Mir-2-P3-v1 HE671256: 344898-344954 [+] Ensembl
Mir-2-P4 HE671256: 345032-345089 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCGACCGCAACCGAGUAGCUCUCUGCCUCACGAAAGACUUGGGUAGUGAGAUGUCCUGGCACAUCAAAAUUCUCACUACCUUGUCUUUCAUGCGGAUAGAGCACAUUCUUCGUUACCGAUUA
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Structure
        10           20        30        40        50        60 
UCGACCGCAACCGAGUA---|    CUG  U  C       UU           UGUCCUGGC 
                    GCUCU   CC CA GAAAGAC  GGGUAGUGAGA         \
                    CGAGA   GG GU CUUUCUG  UCCAUCACUCU         A
AUUAGCCAUUGCUUCUUACA^    UA-  C  A       U-           UAAAACUAC 
120       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-71_5p*
mirBase accessionNone
Sequence 
0- CGAAAGACUUGGGUAGUGAGAUG -23
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Mature sequence

Hme-Mir-71_3p
mirBase accessionMIMAT0024985
Sequence 
40- UCUCACUACCUUGUCUUUCAUG -62
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