Mir-71

MirGeneDB ID

Tca-Mir-71

Family name

MIR-71 (all species)

Seed

CUCACUA

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-71

Paralogues

Orthologues

Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Ava-Mir-71-P20 Ava-Mir-71-P21 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Csc-Mir-71-P14 Csc-Mir-71-P15 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Efe-Mir-71-P1 Efe-Mir-71-P2 Efe-Mir-71-P3 Egr-Mir-71 Esc-Mir-71 Gsa-Mir-71-o7 Gsa-Mir-71-o8 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lan-Mir-71-P4 Lan-Mir-71-P5 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Lpo-Mir-71-P7 Lpo-Mir-71-P8 Lpo-Mir-71-P9 Lpo-Mir-71-P10 Lpo-Mir-71-P11 Lpo-Mir-71-P12 Lpo-Mir-71-P13 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pcr-Mir-71-v1 Pcr-Mir-71-v2 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Sma-Mir-71-o5 Sma-Mir-71-o6 Sme-Mir-71-o1a Sme-Mir-71-o1b Sme-Mir-71-o2 Sme-Mir-71-o3 Sme-Mir-71-o4 Snu-Mir-71 Spu-Mir-71 Tur-Mir-71-P6a Tur-Mir-71-P6b War-Mir-71

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(Tcas5.2)

LG3: 560714-560776 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-71)

Mir-3842 LG3: 559294-559352 [+] Ensembl
Mir-71 LG3: 560714-560776 [+] Ensembl
Mir-2-P1-v1 LG3: 560832-560890 [+] Ensembl
Mir-2-P1-v2 LG3: 560833-560889 [+] Ensembl
Mir-2-P2a LG3: 560954-561011 [+] Ensembl
Mir-2-P2b LG3: 561066-561124 [+] Ensembl
Mir-2-P3-v2 LG3: 561198-561260 [+] Ensembl
Mir-2-P3-v1 LG3: 561200-561258 [+] Ensembl
Mir-2-P4-v2 LG3: 561348-561412 [+] Ensembl
Mir-2-P4-v1 LG3: 561350-561410 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GUUGAUUUUUCUGCAGUAACAGUCUCUUCUUGAAAGACAUGGGUAGUGAGAUGUUUAAUUAAUAAAUUUUGUCUCACUACCUUGUCUUUCAUGUAGCGAUUGUCAAAAUUCAUCAUCAAUGCC

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Structure

        10          20        30        40        50        60 
GUUGAUUUUUCUGCAGUA--|     U  UCU         U             UUUAAUU 
                    ACAGUC CU   UGAAAGACA GGGUAGUGAGAUG       A
                    UGUUAG GA   ACUUUCUGU UCCAUCACUCUGU       A
CCGUAACUACUACUUAAAAC^     C  UGU         -             UUUAAAU 
 120       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Star sequence

Tca-Mir-71_5p*

mirBase accession

MIMAT0008365

Sequence

0- UGAAAGACAUGGGUAGUGAGAUG -23

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Mature sequence

Tca-Mir-71_3p

mirBase accession

MIMAT0019109

Sequence

41- UCUCACUACCUUGUCUUUCAUG -63

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