Mir-71

MirGeneDB ID

Aga-Mir-71

Family name

MIR-71 (all species)

Seed

CUCACUA

Species

African malaria mosquito (Anopheles gambiae)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-71 Agr-Mir-71 Asu-Mir-71 Ava-Mir-71-P20 Ava-Mir-71-P21 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Csc-Mir-71-P14 Csc-Mir-71-P15 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Efe-Mir-71-P1 Efe-Mir-71-P2 Efe-Mir-71-P3 Egr-Mir-71 Esc-Mir-71 Gsa-Mir-71-o7 Gsa-Mir-71-o8 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lan-Mir-71-P4 Lan-Mir-71-P5 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Lpo-Mir-71-P7 Lpo-Mir-71-P8 Lpo-Mir-71-P9 Lpo-Mir-71-P10 Lpo-Mir-71-P11 Lpo-Mir-71-P12 Lpo-Mir-71-P13 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pcr-Mir-71-v1 Pcr-Mir-71-v2 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Sma-Mir-71-o5 Sma-Mir-71-o6 Sme-Mir-71-o1a Sme-Mir-71-o1b Sme-Mir-71-o2 Sme-Mir-71-o3 Sme-Mir-71-o4 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 Tur-Mir-71-P6a Tur-Mir-71-P6b War-Mir-71

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)

NC_064601.1: 106558703-106558794 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-71)

Mir-2-P4-v1 NC_064601.1: 106556282-106556351 [-] Ensembl
Mir-2-P4-v2 NC_064601.1: 106556284-106556349 [-] Ensembl
Mir-2-P3 NC_064601.1: 106556572-106556654 [-] Ensembl
Mir-2-P2b NC_064601.1: 106556743-106556806 [-] Ensembl
Mir-2-P2a NC_064601.1: 106557252-106557346 [-] Ensembl
Mir-2-P1-v1 NC_064601.1: 106557875-106557936 [-] Ensembl
Mir-2-P1-v2 NC_064601.1: 106557875-106557936 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GGUGUGUCGUUGGGCUGUAUUUUGUCUGCAAGAAAGACAUGGGUAGUGAGAUAGUGGCGUUUCAACCCGUGACGGCUGGCGCCGGCUUAGUACUGGUAGAUCUCACUACCUUGUCUUUCAUGUUGAUAGAUACAAUAUAGAAGUAAAAAGGU

Get precursor sequence

Structure

        10        20          30        40        50        60        70      
GGUGUGUCGUUGGGCUGUAU--|     U   A        U            AGUGGCGUUUCAACCCGUGACGG 
                      UUUGUC GCA GAAAGACA GGGUAGUGAGAU                       \
                      AGAUAG UGU CUUUCUGU UCCAUCACUCUA                       C
UGGAAAAAUGAAGAUAUAACAU^     U   A        -            GAUGGUCAUGAUUCGGCCGCGGU 
150       140       130       120        110       100        90        80

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Ab	Ab	He	He	Mi	Mi	Ov	Ov	Ov

Star sequence

Aga-Mir-71_5p*

mirBase accession

None

Sequence

0- AGAAAGACAUGGGUAGUGAGAUA -23

Get sequence

Mature sequence

Aga-Mir-71_3p

mirBase accession

None

Sequence

70- UCUCACUACCUUGUCUUUCAUG -92

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