Mir-71

MirGeneDB ID

Pfl-Mir-71

Family name

MIR-71 (all species)

Seed

GAAAGAC

Species

Ptychodera (Ptychodera flava)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Ava-Mir-71-P20 Ava-Mir-71-P21 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Csc-Mir-71-P14 Csc-Mir-71-P15 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Efe-Mir-71-P1 Efe-Mir-71-P2 Efe-Mir-71-P3 Egr-Mir-71 Esc-Mir-71 Gsa-Mir-71-o7 Gsa-Mir-71-o8 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lan-Mir-71-P4 Lan-Mir-71-P5 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Lpo-Mir-71-P7 Lpo-Mir-71-P8 Lpo-Mir-71-P9 Lpo-Mir-71-P10 Lpo-Mir-71-P11 Lpo-Mir-71-P12 Lpo-Mir-71-P13 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pcr-Mir-71-v1 Pcr-Mir-71-v2 Pdu-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Sma-Mir-71-o5 Sma-Mir-71-o6 Sme-Mir-71-o1a Sme-Mir-71-o1b Sme-Mir-71-o2 Sme-Mir-71-o3 Sme-Mir-71-o4 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 Tur-Mir-71-P6a Tur-Mir-71-P6b War-Mir-71

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(Pfl)

LD353158.1: 300398-300457 [-]

Precursor
(pre-Mir +30nt flank)

GACGGCAAAACAAGGUUGGUGUGUAUUUUGUGAAAGACACAGGUAGUGAGAUAGUCUAGUAUGUGCAUCUCGCUACUUUGGUCUCUCUCCAAAAUGCCUGCCACUAUACAGCCUACAGAU

Get precursor sequence

Structure

        10         20        30         40        50         
GACGGCAAAACAAGGUU-    U        U-| A    AC            AGUCUA 
                  GGUG GUAUUUUG  GA AGAC  AGGUAGUGAGAU      G
                  CCGU CGUAAAAC  CU UCUG  UUCAUCGCUCUA      U
UAGACAUCCGACAUAUCA    C        CU^ C    GU            CGUGUA 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

To

Mature sequence

Pfl-Mir-71_5p

mirBase accession

None

Sequence

0- UGAAAGACACAGGUAGUGAGAU -22

Get sequence

Star sequence

Pfl-Mir-71_3p* (predicted)

mirBase accession

None

Sequence

38- CUCGCUACUUUGGUCUCUCUCC -60

Get sequence