MirGeneDB 3.0
MirGeneDB ID

Pau-Mir-71

Family name MIR-71 (all species)
Seed GAAAGAC
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Ava-Mir-71-P20  Ava-Mir-71-P21  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Egr-Mir-71  Esc-Mir-71  Gsa-Mir-71-o7  Gsa-Mir-71-o8  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pca-Mir-71  Pcr-Mir-71-v1  Pcr-Mir-71-v2  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sma-Mir-71-o5  Sma-Mir-71-o6  Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o2  Sme-Mir-71-o3  Sme-Mir-71-o4  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  Tur-Mir-71-P6a  Tur-Mir-71-P6b  War-Mir-71 
Node of Origin (locus) Bilateria
Node of Origin (family) Nephrozoa
Genome context
(Phoronis_australis_GCA_002633005)		 NMRA01000510.1: 285249-285308 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACGUUGCCAUGGAAAUGCUGGAUCACUGUGUGAAAGACAUGGGUAGUGAGAUGGUCACUGUAAAUGCACCUCGCUACCGUGUCUUUUCCAAAGUUUUCUUGACCUCGUCCGUCUCCUCUA
Get precursor sequence
Structure
        10          20        30        40        50          
ACGUUGCCAUGGAAAUGCU--|  UC   G  UG          G       A  GUCACU 
                     GGA  ACU UG  AAAGACAUGG UAGUGAG UG      \
                     UCU  UGA AC  UUUCUGUGCC AUCGCUC AC      G
AUCUCCUCUGCCUGCUCCAGU^  UU   A  CU          -       C  GUAAAU 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Pau-Mir-71_5p
mirBase accessionNone
Sequence 
0- UGAAAGACAUGGGUAGUGAGAUG -23
Get sequence
Star sequence

Pau-Mir-71_3p* (predicted)
mirBase accessionNone
Sequence 
38- CCUCGCUACCGUGUCUUUUCCA -60
Get sequence